RNA id: XM_026947178.2


Basic Information

Item Value
RNA id XM_026947178.2
length 2039
RNA type mRNA
GC content 0.44
exon number 6
gene id rcn1
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 24915616 ~ 24930743 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTCGTGAGATTACGCGTCATCCTACAACGtggcgccacacacacacacgcgcgcgcgcactcactctcacacacacacacacacacacacacacagagccaacagcagagtgtgtgagcaggttTAAAGCTGCGGGGAGGCTGGCTcggtgtgtgagacagtgtgatatAAGCGGGTTTAAAGGAGAAGCCCCTGAATGAGAGGTTGAGGAGCTGAGGGATGAACTGATGAACTGATGAACTGCGCTCTTCCTCTTCATGCTGTAAATCTGCTGCACTGAGGCCGGAGCGCGCGCTGAGTCAGGGGCACTCGGAGCCCCGCTGGGGtgtgttttgtacctttaatcaCCGTAAGAAGCAAGTAGTTTGTACACAACAGGTCGGGCAGTTTGGACAGTGTTAACAGCCATGCACGCACTGGGTGtagtgtgtgtcgtgtgtgtgctgctgtgtgtggtgGATCTGAAGCCCACAGTGAGAAAGGACAGAATTCACCATGAAGCCGAACTTAGCCGGAAACCGCACGCGGACCAGCACGCGGACCAGCAGAGCCTGCAGTTCGACCATGAAGCTTTTTTGGGAAAAGAAGAGGCGAAGACATTCGACCAGCTGagtccagaggagagcagagacaGACTGAGtAAGATTGTGGATCGTATCGATAGTGATGCTGATGGATTCATAACTTCTGACGAGCTGAAGCTTTGGATTAAACGCGTTCAAAAACGCTATGTTTATGAGAACGTTGCTAAAATATGGCGTGACTACGACCTGAACAAAGACAATGCGATTGCCTGGGAGGAGTACAAACAGGCCACCTATGGATATTACCTTGCGAACCCAGAAGAGTTTGCGGATTCGTCTGATCAGTTCAGCTTTAAGAAGATGCTGCCACGAGATGAGCGCAGATTTAAAGCAGCTGATCTGAATGGAGATGAGCGAGCAGAGAGGGATGAGTTCACTGCGTTCCTCCATCCTGAGGAATTTGAGCACATGAGGGACATTGTTGTCCTGGAGACATTGGAGGACATCGATAAGAACGGAGACGGTTACGTGGATGAAGACGAATACATCGcggACATGTTTGCACATGAAGATGGTGGGCCTGAACCAGACTGGGTGAAAACTGAGAGAGATCAGTTTTCTGATTTCAGAGATCTGAATAAAGATGGGAAGATGGATGTGGAGGAGATTCGTCACTGGATTCTTCCTCAGGATTACGATCATGCTCAGGCTGAGGCACGACACCTTCTGTATGAGTCCGACACTGATAAGGATCAGATGCTGACAAAAGAAGAGATTCTGCAGAACTGGAACATGTTTGTAGGAAGTCAAGCGACAAACTATGGAGAAGATCTGACCAGAAACCATGATGAGCTCTGAACACAATATAATCAAGAGCAATAATCACTTTGCATTTCTACATTCACATGATTAATAACATCTTTAAGTACATGAACTATGGACACACAATCGGTAATCACTAAAACATTATTAGGATGTGAAATCCCAGCACTTTCTCCAGGAGTGTCTGATTGACAGATCTACAGATTTGCAGATCTCTAATCTACCTCAGTATTACTCAGTGTCCTTAGTGCCATTCATGgctttttcttctgtttgtgAGTGGGTTAGAGACTAACTGCAAGTTTTCCACAGATCAATTTTGTTTAGTTAGGTCTTTGTAAAGATCTGTATAATCAGTCTGTTCtgtaaagtgtgttttgtgtatgtttattgTGCTTTAGTGTTATTTACTCTTGAGGAAACAGTGTTACATAGTCAATTACAAACAGAACATTACAGTATGAggttttttaatctttatgtCAGTTTTGAGCTTTGATTCTggtcttattttaaaaacagttttaactTTTTACTCAGAAGTTTATATTCACTACAACTTTTATGGATTCATTTACCAGATAATACCAGTAAAATTTTAGCATCATGCACTGGTTACTAATGCAGTGTTGCCGAGCAATTAGTGACACTGCAGTTGATTTTCATGACAAATAAACTATGACTATTCTGCA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23898 RCN1; reticulocalbin-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221673 lncRNA upstream 109051 24803771 ~ 24806565 (+) True G187276
TU221735 lncRNA upstream 141430 24773765 ~ 24774186 (+) True G187316
TU221722 lncRNA upstream 178545 24736609 ~ 24737071 (+) True G187309
TU221707 lncRNA upstream 208112 24706167 ~ 24707504 (+) True G187294
TU221689 lncRNA upstream 268954 24642759 ~ 24646662 (+) True G187286
TU221763 lncRNA downstream 902 24931645 ~ 24932046 (+) True G187340
TU221986 lncRNA downstream 57136 24987879 ~ 24988093 (+) True G187527
TU222026 lncRNA downstream 190504 25121247 ~ 25122115 (+) True G187563
TU222076 lncRNA downstream 245065 25175808 ~ 25176089 (+) True G187612
TU222133 lncRNA downstream 341533 25272276 ~ 25272599 (+) True G187668
XM_026947171.2 mRNA upstream 2493 24809829 ~ 24913123 (+) False vps13c
XM_026947172.2 mRNA upstream 2493 24809829 ~ 24913123 (+) False vps13c
XM_026947173.2 mRNA upstream 2493 24809829 ~ 24913123 (+) False vps13c
XM_026947177.2 mRNA upstream 2493 24809829 ~ 24913123 (+) False vps13c
XM_026947176.2 mRNA upstream 2493 24831748 ~ 24913123 (+) False vps13c
XM_026947229.2 mRNA downstream 19671 24950414 ~ 24984205 (+) True zdhhc13
XM_026910019.2 mRNA downstream 227662 25158405 ~ 25170812 (+) True immp1l
XM_034308686.1 mRNA downstream 228040 25158783 ~ 25168182 (+) False immp1l
XM_026910017.2 mRNA downstream 228118 25158861 ~ 25170812 (+) False immp1l
XM_026910020.2 mRNA downstream 228143 25158886 ~ 25170812 (+) False immp1l
TU221326 other upstream 704891 24207893 ~ 24210725 (+) True glrx2
TU221328 other upstream 704891 24207893 ~ 24210725 (+) False glrx2
trnaq-uug_6 other upstream 968553 23946992 ~ 23947063 (+) True trnaq-uug_6
trnaq-uug_5 other upstream 976728 23938817 ~ 23938888 (+) True trnaq-uug_5
trnaq-cug_12 other upstream 977236 23938309 ~ 23938380 (+) True trnaq-cug_12
trnar-acg_9 other downstream 575680 25506423 ~ 25506495 (+) True trnar-acg_9
TU222375 other downstream 601002 25531745 ~ 25593503 (+) False LOC113523924
TU222713 other downstream 1255119 26185862 ~ 26212109 (+) False polr2l
TU222716 other downstream 1276199 26206942 ~ 26210010 (+) True G188164
TU222712 other downstream 1279816 26210559 ~ 26212109 (+) False polr2l

Expression Profile