RNA id: XM_026947228.2


Basic Information

Item Value
RNA id XM_026947228.2
length 5461
RNA type mRNA
GC content 0.49
exon number 28
gene id dot1l
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 24520342 ~ 24548207 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttttcctcccttcgCCGGGCAAGATGGCGGCGGTAGCGCCGAGATGGAGTAGCCGCTCAGCCTGAGCAGTTTTTAGACAAAATAGCTTAAACATCTAACTTAAATCCGAAAATAGCACAGTTTTTCTTTGGACCTTTTAACTTTCGTTaagttttgatattttgtgtCAGAATGTTCAAATTCTAGGTATCTTTTACTCTGGTCCAGCAGGCAAACAAGGCAGAAAGTATAATGGGAGAGAAGCTCGAGCTGAAGCTCAAGTCGCCGGTCGGAGCCGAAGCTGCGGGATATCCGTGGCCATTACCAGTATATGATAAACATCACGATGCTGCACATGAAATTATTGAAACCATACGGTGGGTGTGTGAAGAGATCCCTGACCTTAAACTGGCGATGGAGAACTACGTGCTCATTGACTATGACACAAAAAGtTTTGAAAGTATGCAGAGGCTATGTGACAAGTACAACAGAGCTATTGACAGCATTCACCAGCTGTGGAAAGGTACAACTCAGCCGATGAAACTGAATAAAAGGCCTTCAAATGGCCTGCTTCGACACATCCTGCAGCAGGTCTACAATCACTCTGTAACTGATCCAGAGAAGCTAAACAACTATGAGCCCTTCTCTCCTGAGGTGTATGGAGAGACTTCATTTGACCTGGTGGCTCAGATCATTGATGAGATTGAGATGATGGAGGAGGACACTTTTGTGGACCTGGGCAGCGGTGTTGGCCAGGTGGTGCTGCAGGTTGCTGCAGCTACTAACTGTAAGCACTACTACGGTGTAGAGAAGGCCGAGATTCCAGCCACATACGCAGAGGCAATGGACAGGGAATTCAAGAGGTGGATGAAGTGGTATGGGAAAAAACATGGCGAGTATACACTGGAGAGAGGAGATTTTCTGTCAGAAGACTGGAGAGAAAGGATAGCAAACACAAGTGTTATTTTTGTGAATAACTTTGCCTTTGGTCCAGAGGTGGATCACCAGCTGAAGGAACGATTTGCCAACATGAAGGAAGGTGGAAAAATTGTATCCTCAAAACCTTTTGCACCTCTCAATTTTAGAATCAACAGTCGAAACTTGAGTGATATTGGCACAATAATGCGTGTTGTTGAACTTTCTCCACTGAGAGGCTCAGTGTCTTGGACAGGGAAGCCAGTTTCCTACTATCTGCATACAATAGACCGTACCATACTTGAAAACTATTTTTCTAGTCTTAAAAATCCTAAACTCAGGGAGGAGCAGGAAGCAGTGAAACGGCGTCAACAGAAGGAGACCAAGGACAGTAAAAGCAGCAGCACCACCCCAACCAAGCCAAAGGAGCACAAGGAGTCAGGTGGTGAGGAGGAGACCTCAGGGGCACTGGTACCTGTCAAGTCGTCACCTAAACCTCGTCGTGCCAAGCTACTGGCCAAGGGCCGCAAGCTGGGCAACAGGAAACGTGGGCGGCCCAAGAAGTCCATCATGGCAGCAGCCACTGAACGCAAGACCAAGAAGAGTCAGAGTGCCCTAGAACTGCTTCATGCCAAGACTGTCTCAGCAGCGCCTCCTCAGGATGCATACAAATCGCCTCAAAGCCCCTACTACCAGCTACCTCCTAAAGTTCAGCATTACACAGCTGGCCAGCTGCTGCTCGGCCCCATGCCTGTGGGCCTGCAGACTCTACTGGATAATTTCAAAGTCCAGTACATGCAGTTCTTGTCCTATATGAAGACACCACAGTACCACACGAACCTACAGCAAGCGCTGGAGCAAGAAAGGCTCAGACACGCTGAACTGTCAGGTCAAGCCCAGCGATTGATGAATGCCTGCCATGCTCACAAGGAGAGGATCAGGGACCTTTTTCAGGCCAAACTAGAGGAGCTAGGAGTAAAGGCAGTGACAGTAGAGGACCTGGTGCAGGCTCAGAAAGAGATCATGGCCCAtaatatgcagctgaaagagcAGACCAAGCAGCTGGAGAGAGACATGGCTGAGCTTAAAGACCAGAGCCTGCTACTGCTAAAGGCTCGCTGTGAGGAACTGAAACTGGACTGGGGATCTCTGTGTCTCGAGACCCTGTTAAAGGAAAAGGCTGCTCTGCGTAGACAGATCTCTGAGAAACAGCGCCACTGCCTAGAGCTTCAGATTAGCATTGTGGAGCTGGAGAAAAGCCAAAGACAGCAGGAGCTGCTACAGCTCAAGTCCTCCTACAGCCCATGTAAAGACTCTCCATACCGGAAGACCATCCCAAGTCTAGAGCCCCGGCCCCCGCTAGACACTAACACCCCCAAACTGGCTGAATTGAATGGCCTTAGCCCCGAGCTGTCTATTAATGGCACAGCATCTCCTAGCTATGAGCGTGGAGGCAGCATCAGCTGCTTCAATGGCAAGAATGAGCTGCTCTCCCACTACCTGCCAATTTCCCCTGAGCATGAGATTGTGCCACCCACTCCAGAGCCTCGGAGCAGACCTCTAGGGCAGCCCCAGCCCGACTACACACGCTTTTCTCCAGCTAAGATTGCCCTGCGCAGGCACCTCAACCAAGACTCCTCtacaggccaggccagggcgCTCAGCACTATCCACAGGGGTGACGTTGGTGTTGCATCATCTCCAACCTTGAAACAGGGCTGCTCCTCACCAGGTGCAGCTGAAAATCAACAACCAAACACACTCAAGAACACAGAgaggGTGAATAAGGAAAAGAGCCCAGCGGGACCAGGTGACAATATAACCAGTCTCCCAATCAGCATCCCTCTCAGCACTGTGCACCCCAGCAAACTTCCTGTCAGCATCCCACTGGCCAGCGTGGTGCTGCCCAGTCGCGCCGAGAGACtgAGGAATACTCCCAGTCCTATGTCCAGTAGGGAGCAGTCAGCAGGGCAAAGCAGCAACAACAAGCAACCTCTGACACCTAATTCGGGGTTCCCCTCTGTTTCAGGGTTGGTAAACGGCTCCCACTCTGCTATATGTGATCAAGACTGCAACTCCATGTCTCCTCCACCCCACAGCAACCCCCTGCTGGGTCTTCAGTCACGTGGGTCTGGCTCCAGCCCACTGCTGAGCACTGGAGGAGTGCTGCAATATGCAGACAGACCCCCCCGTCTTCCTGATGAAGGCCACCAGCATCATGGGCTTGAATCTGATCCCGAGACTCTAGACAGTGAGGCTCGGCGCCACAtgttcttctcttcctcctcctcttcgtcgtcatcctcctcctctgccgGAGGCTCGCGCCCACATCATGGATCAGCCAAGCAGGGAAAGCACCACAGCagtcaccaccaccatcaccaccatcactacTCGCCAGGCTCTCACGGGTCAGAGGGACGCAAGAGAGGCCGTCGGAAGCGCAGCTCCTCCAGCCTCATTCCAGCAAGTGGTTCCCCGAAAAAACGATCATTCCCTGGGATTAACTACTCCTCGGGTTCCCCACTTAATATAAACACCATGGTGAACAACATTAATCAGCCGCTGGAGATCTCAGCCATATCCTCTCCAGAGCAGACAGGTGGCAGCCCATGTGAGACGGACCTGGACCAGCCACCAGTGCTTAAGAGAGAACGCCCTCTTGAGATTAATGGCTCCAGCCGTGACTTATCCACCCCTAGCTCAGAGGATGAGGAAACTGGATATCCAGCAGACAGTGGCTCCTTACGaATTGAAAGGAAGATTGCAACAATTTCTCTGGAGAGCCGAGATGGTGAGAGGGGTTCACAGGGCCGAAAATCAGGGGCCAGTAGTGTGAGCAGCGACGTCTCCTCTTCTTCCAGCAAATGGAAGTCCACTTTCTCACCCATCTCTGACCCCAAGCCCACTCCTCCAGACCTCCGCCAGAGCAGCTCCCCTTTCTGTGGGGGCATGTCTTGTGGCCCAGACTCGGACTCTGAGCAGAAACAGCAAAAGAGAGCGGACCGGGACCGCAGTGAGCATTATGGGAACCCTAAAGCCTTCCTAGGTCTGGACAAAGCACGGGAATCCTTTCCTAAGCAAAAGGCACGGGAGTGGGAGCTAAAGGCCATCAGTAGTCTGACCAGCCAGAACCTCTTCATCTCTGCTGCAGCTGGTGGAGGCCTCCTATGTGGAAAAGCGGGTAGAGCCACTGCAGTTTCTTCTGCCTCCTCTGTGGGACAGTATTTCCCTCTGGGCGGAACCTCGGTCTTACAGTCCTTATTTGGAGCGCAGACTCCTAATCCGGCCACCAGCGGACCGCCGCGATTGGTTAACGGTCACTCCGTGCTGGGCAGCTTTTCTAGTGCTGGATTGGCAGGGGGCGCTGCAGGAGGTAACTGAAGCAATCTACCTCAACCCAATGCAACCTATGCAATGGACAGGTGTAGACCAATGGGCTCTTCCTCACTGGTGCTCCGATGTTAGCTAAAGCCACCCAAAGGTGTCAGAACTTGACACCAACGCATCTGAATACACATGCAGAAACacgtgtgtgtacacacacacacaaacaggtcaGGACCACTCATAACCTTGTGCTCTTGTCTGGTTAAAGTTGTAAAAAGGAGGCACTGACAAAAGTGAATATGCCATCGTTcattaattatgtatttaaacaATGCCTTAGCGGATGGTAAATTCTAAACATCATTGATGATTTTTGTGCAAAATTTGggatctgtaaaatgtttttattactttttttttttttgggaagtcCAGTATAAACTAGGCATCAGCTGAGCGAAAACCTAAATTATTGAACATTCGCTCGATGCTGAAGCGCAGCACTGTGTTAGCCTTTAACATTGCCTGGGATACTATGGCAACTTCTGTAGAGGTAAATGTGGGAATATAAACTTGAACATGAACATGGAAATGTGATTACAAAAAAGTTACAATTCTGTAATGGCATCATGAATCgtgatttaaattattttgaacTGCAGCATTTGTTGCATAcgtatacattatatattcctttacatttacactggaTAGAAGACAATTCACTACAAACAACTGGCCTGATAATTGAGGAAACTCAGTTATGTTGTTTTGGGTTAcatagatttaattttttttttttatatgaaaattcTCTtaactcattaacacacacagtggctaAAGCACAAATTATTAAACGTATTTATCAAGATCCTGTGTGTGAAAACATCAAATAAACTTTGgcttttaaagagaaacatattAATGTACAATATGCTAtatctaatttttaaaaagaattatttctgatttttctaAATGATGCCTACACATGTAAAGTTGGAGCTCAGCGTTGGACATGATTTAATCAattcaggtgatttttttccgaGACAAATAAAGATCCGTGGTGCTGAAAACACTTTTGCTCAGAAAGGTGCTAGTATCTGCTTTTGAATGATGCATTCATGATTAATGTTGTGGTGCTCTCTGCAAGTAGGAAaaccacacacacgcgcacacacacacacacacacacacgcatgattgaaaaaaaaaaatcttcaaacaC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221643 lncRNA upstream 8174 24511672 ~ 24512168 (+) True G187257
TU221283 lncRNA upstream 316640 24157122 ~ 24203702 (+) False G186949
TU221640 lncRNA downstream 15256 24563463 ~ 24568611 (+) False oaz1a
TU221659 lncRNA downstream 26808 24575015 ~ 24576233 (+) True G187265
TU221662 lncRNA downstream 41119 24589326 ~ 24589703 (+) True G187268
TU221689 lncRNA downstream 94552 24642759 ~ 24646662 (+) True G187286
TU221707 lncRNA downstream 157960 24706167 ~ 24707504 (+) True G187294
XM_026947277.2 mRNA upstream 49477 24461882 ~ 24470865 (+) True LOC113547073
XM_034308851.1 mRNA upstream 49477 24464555 ~ 24470865 (+) False LOC113547073
XM_026947279.2 mRNA upstream 49477 24464582 ~ 24470865 (+) False LOC113547073
XM_026947276.2 mRNA upstream 139028 24338220 ~ 24381314 (+) True onecut3a
XM_026947280.2 mRNA upstream 187672 24323165 ~ 24332670 (+) True LOC113547074
XM_026947292.2 mRNA downstream 6454 24554661 ~ 24557994 (+) False amh
XM_026947294.2 mRNA downstream 6455 24554662 ~ 24557994 (+) False amh
XM_026947291.2 mRNA downstream 6456 24554663 ~ 24557994 (+) True amh
XM_034308773.1 mRNA downstream 15193 24563400 ~ 24568643 (+) True oaz1a
XM_026947141.2 mRNA downstream 100820 24649027 ~ 24653190 (+) True rrp36
TU221326 other upstream 309617 24207893 ~ 24210725 (+) True glrx2
TU221328 other upstream 309617 24207893 ~ 24210725 (+) False glrx2
trnaq-uug_6 other upstream 573279 23946992 ~ 23947063 (+) True trnaq-uug_6
trnaq-uug_5 other upstream 581454 23938817 ~ 23938888 (+) True trnaq-uug_5
trnaq-cug_12 other upstream 581962 23938309 ~ 23938380 (+) True trnaq-cug_12
trnar-acg_9 other downstream 958216 25506423 ~ 25506495 (+) True trnar-acg_9
TU222375 other downstream 983538 25531745 ~ 25593503 (+) False LOC113523924
TU222713 other downstream 1637655 26185862 ~ 26212109 (+) False polr2l
TU222716 other downstream 1658735 26206942 ~ 26210010 (+) True G188164
TU222712 other downstream 1662352 26210559 ~ 26212109 (+) False polr2l

Expression Profile