RNA id: XM_034308629.1


Basic Information

Item Value
RNA id XM_034308629.1
length 4374
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC113547059
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 24743111 ~ 24765317 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCGCCGTCCTGCCCTCAGTGCGCTACGTCACGAGGCAGGCTTTAGGCGGACGTGTAGCTATGAAAATAGAGGAACAGCCACCGgcgccatgtgtgtgtgtaccgcgGGACTCGGGGAAAGGTTAAAAAGCTGAAGAGAAGCGCCTgattttctgctgttttatttacCGGGAGCTCAGCAGCGCGAGTCCGGCGGAGCGACGCGATGTAGCGGGTTTGAGTTTGTAAGTTGGCCGCTACAGTTGGAGCGAAGAGGAAACAGCCACCGATCCAGAAGTAAAACAACAGCTGGTGTGGAGTCATGGAAGGACGCACACGGGAAGGTGCAGGGCCAGATACAGACCAAGATCGGCAGTATTGTGAGCTCTGTGGTAAAATGGAGAACCTTATGAAGTGTGGTCGCTGTCGCAGCTCTTTCTACTGCAGCAAGGATCACCAGAAACAGGACTGGAAGAAGCACAAGCAGGTCTGCAAGCAGGCCGAAACCAACCCCggccacacaccacacacaccacacacacactcagctcaacTTTGCCGAGATAACGTCAATAAGGAGCCGGAACCGCTGCAGAAACAGCAGAAGAGCTGTACGGTCTCAGAAAAGTCAACTGGGTCTTCCAAACCACATGTGGACACTGGAAGAAGTGCCCCACTGCTCAAGCCTGTGTCAGGAACCGTGAGCGCATGTGACCCTCAACAGACTGGTGATGATACTTCCAACGGGCAGACTATGTCTCCTCAGCAAAAACTGGCCACAGAATATATAGGCCCATGTATGAACAAGCATGGCATCTGTGTTGTGAACAACTTCCTTGGTGAAGAACTTGGACTCAGTGTGTTAGAAGAGGTTCGTGCTCTCTACATCTCTGGAGAATTTACAGATGGACAATTGGTCAGTCAGAGAAGTGACTCAACTAAGGACATAAGGGGAGATAAGATCACTTGGATCGAGGGAAAGGAACCTGGATGTGAGAAGATAGCTGTCCTAATGAGCCGCATGGACGATGTTGTCCGACACTGCAATGGAAAACTGGGAAACTACAGGATAAATGGAAGGACAAAAGCAATGGTAGCTTGTTACCCTGGCAAGGGCACTGGATATGTGCGGCATGTGGACAACCCTAATGGTGACGGGAGATGTGTTACATGCATTTATTACTTAAATAAAGACTGGAATGCCAAGGAACATGGTGGTATCTTACGGATCTTTCCAGATGGCAAAGCCCAGTTTGCTGACATTGAGCCCCTATTTGACAGACTGCTGTTTTTTTGGTCAGACAGACGGAACCCACATGAGGTCCAGCCTGCATACGCCACTCGGTATGCTATTACTGTGTGGTATTTTGATGCTGATGAGCGAGCTCGGGCTAAAGAGAAATACCTAACTGTAGAAAAAGGGGGAAAAGTGGAGCTGAACCGGTCGACTGAGCCATGCTAATGAACAAGAGTTGAACAAACCTGCTGAAAGGATGAGGAAAAGAATGAAATGGAATAGGTGTTAACCTTCAGAATGTTTTTTACCTGCTGCTTGAAGACATGAATACCGTACAAAGGAAGGACAAAAATGACTGTGCTCCATCTTAATTGTGCTAGTGCTGTGCTAAATGAGCAGGCATGCAATAACCCACCACTGCATGTGTAGGAACATATACAAAGTGTTTAAATTAAGTAAGTGTGTCTGTGCTGCAATCAGGAAACAAGAAgtcatttgtaaatataataaattctcAGACAGCCCAGAAGAAACATGATACAGTGTACTTAACATCCAAAGTATACATGAGtatacaacaattacaattgCATTATTTATTCCGGTCTGTTTTTTTGATGGATACAACCTACGCTTGTCCAATCCAGGTTATATGGAATTCTTTTTGCACCCATTGTCTGGTGATAGCATATTTGTAATGTCTTTGCCAATGTTGAACAATATGAATGTCTGTTATCACAGACATGATGTCTTCTGTTTGTGATCGATTCCTCCATCTTAGTTTACAGCtctgaatttaaatttaaaaaacacccTTTTTTGTTGACGGTGATGCCACAATTATCAGACATTAGCAGCGTGAAATACTGACATACCAAAATTCTTTCATTTGTACAGGACCTCCTCAGACATACTGAAAATGTGAACATCTCATGGTTTATAGACAATAGGTTAATACAAGCTAAAACATTCAGctcaataatttaataataatgcagaGGGAAAACAGAGATCTCCCTGCAGCTCAGATCAGGCATGTCCTTGCAATACaacacatattcacatattgCATTTAGCATCATTTAGTAGTGTGGCATATATAGCAATATAGCATAATTTAATACGCAGAGATTGCCCTTCACTAAAACTGTATTGCGTAAAAAGGGGCCCCtagtaaaaaaacaagaatagaAGAAAGCTGGGGTTAGTACAGCAGTCAGCTTTAGATCATTTCACATCTTTTACTTATTCAGGTCTTAATATCTGCAGAAGATCTACACAGTGCACACTGGTCATTCATAGCTTAAATGAAAGAAGTCACTTGGGCCTTCAAATACATTGAGataaatgactaaatttgtCTAATTCATATTAATTCTGAGAACTGTAAAACCAGACATTTTCAAAAAAGccgtttttgtttgtgtttattattacagtgtaaatTGTCCTGAAGGAATGTTTTCTGTAGCGGGACAACTTAATAGACTTGATTAATACATGAAACAAATTGAGGCAGTTATCTAACAGCATTAAGGGTGTCTGCAGCAAtttctacagtttttttttttaacccaaaacCTACCAAACAtatctagttttttttattacattattataataatcaccaatttttctttattaattctAATGCTGTTAATTGGTGATTTTTGCTTGTAATAAAATCTGTCGACTAGATTGGAGCAGTGTAAAAGAAATAATGTAGCTGCTTTTAACAAATGTgaacaaaatgatttaaattatattaattacattaatagaATTTTTAGGTTTATTACTTCATTTGTAAAACCTAAAGGTCCTTTACAAATTATAAATCATAATGCAGTTTATAAATTACCACCATTAGCTGTCTGTTTTAGATTTATATCATGAAAAAGTACATCCTGGGATGATCTAAGCTTACACTCTTCATTGTCTTCATGAGCGTGTAAAGAGAAGGGAGGGCTCTTCAAACGAGCACCGAAGGGAATGTGACCTTATACAGCAGCCTCATAGGGTATGAAAAACCACCAATCAGGACGAGCTGTTAAGgctatagaaaataaaaaagattatgGGGTAAAAGGTGAGCACTGAGCAAAAACCTCTGGAACAAGAGGTTCAGTATTTCAGAACGCATCGTGTTGCACAAAGGGAGAGTCAGGTCGTTTTTGAGATTTCATCAGAAAAAGCCACTGTACATGGCAGTCTGAAATTTCACATGCATATAATGATGTAGTTATAAAGAATCATGAAAAGGAGATATTAATGATAACATTGATATGTTCTCATTACTAACTTTTAATGTTTGACCTAATTCTGAAGTACATGCTGGCAACTAAAACCATTAGGGTACAATATGAAAGTAGTAGTCCCTGTTTTGCAAGTGCTGCTGTAATGCCCCGTTGGTACACGTCCAGAAATTGAtttttgctgcctcacagctccaggggtccccggttcgatcctgagcttgggttactgtctgtgcggaATTTCAGTGCATGTTCCCCCTCTGTCTACacgggtttcctccgggtttccttccacctcccaaaaacatgcaggtgggtggattggctaagataaattgcccctaggtgtgaatggttgtgtgagtgtgtgtgtgtgcatggtaccctgtgatggactgtgATCGACAGGGTGTATccctgcctcacgcccagtgtttcTGGCTCCGGATCCACGGCACCCCTGACCGTATAAGCAGTTAGAGCAATCTCTGAAAAATAACCCATTCAAAAATTACTACTGTTTAGTCTGGCTAATCTCTGTCCCAAATGAatcacaaacagaaataaatcttgaaatgtgtatgtgtgtatgaaagagGGTGGAAGGAGGAGGGTGGCATTCTGCTCTCCCGACAAATCAGAAAACTAACCAATCACAGGTATTGGTGAGCTCGTGTATAAGTTACAGAAAAGTATGTAAAGGGTATTGCTCTCTTCCAAGTGCTTTCAGATGCCCTGacactgcatgagcagcagtttgaaaagatacaGTGGCTGCCTTTATGTTTGTAAGAAAAGCATGTATTAGCATCACCCATGCCAAATGAATGTatatccactttaataggaacacctgtacacctgctcatttatgcagttatccaatcattcactaatgtgg

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0031418 L-ascorbic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221722 lncRNA upstream 6041 24736609 ~ 24737071 (+) True G187309
TU221707 lncRNA upstream 35608 24706167 ~ 24707504 (+) True G187294
TU221689 lncRNA upstream 96450 24642759 ~ 24646662 (+) True G187286
TU221662 lncRNA upstream 153409 24589326 ~ 24589703 (+) True G187268
TU221659 lncRNA upstream 166879 24575015 ~ 24576233 (+) True G187265
TU221735 lncRNA downstream 8448 24773765 ~ 24774186 (+) True G187316
TU221673 lncRNA downstream 38454 24803771 ~ 24806565 (+) True G187276
TU221763 lncRNA downstream 166328 24931645 ~ 24932046 (+) True G187340
TU221986 lncRNA downstream 222562 24987879 ~ 24988093 (+) True G187527
TU222026 lncRNA downstream 355930 25121247 ~ 25122115 (+) True G187563
XM_026947144.2 mRNA upstream 38204 24684629 ~ 24704908 (+) False ankrd24
XM_026947171.2 mRNA downstream 44512 24809829 ~ 24913123 (+) False vps13c
XM_026947172.2 mRNA downstream 44512 24809829 ~ 24913123 (+) False vps13c
XM_026947173.2 mRNA downstream 44512 24809829 ~ 24913123 (+) False vps13c
XM_026947177.2 mRNA downstream 44512 24809829 ~ 24913123 (+) False vps13c
XM_026947175.2 mRNA downstream 44512 24809829 ~ 24911410 (+) True vps13c
TU221326 other upstream 532387 24207893 ~ 24210725 (+) True glrx2
TU221328 other upstream 532387 24207893 ~ 24210725 (+) False glrx2
trnaq-uug_6 other upstream 796049 23946992 ~ 23947063 (+) True trnaq-uug_6
trnaq-uug_5 other upstream 804224 23938817 ~ 23938888 (+) True trnaq-uug_5
trnaq-cug_12 other upstream 804732 23938309 ~ 23938380 (+) True trnaq-cug_12
trnar-acg_9 other downstream 741106 25506423 ~ 25506495 (+) True trnar-acg_9
TU222375 other downstream 766428 25531745 ~ 25593503 (+) False LOC113523924
TU222713 other downstream 1420545 26185862 ~ 26212109 (+) False polr2l
TU222716 other downstream 1441625 26206942 ~ 26210010 (+) True G188164
TU222712 other downstream 1445242 26210559 ~ 26212109 (+) False polr2l

Expression Profile