RNA id: XM_026947273.2


Basic Information

Item Value
RNA id XM_026947273.2
length 2928
RNA type mRNA
GC content 0.45
exon number 12
gene id ccdc50
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 24239827 ~ 24263752 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTAAAATGTGGCTGAAATGCGGCCCTGTCGTGATGCAGAGGGAGGggctcgagagagagagagagagagagcgagagagagagagaggttacaGAAACCAAAAACAGAAACCTGCCTTAAAATCACTGGAAGCATTCTTCCTGGAAGCTGAAACCATCTTTATCTCTAACACCATGGAGGATATGAGTATCGATCAGAAAAGGCTCCCTGGCGTCAAAGAGGTGTGTCGCGATTTTGCTGTGCTGGAGGATCACTGTCTGGCCCACAACCTTCAAGAACAAGAAATTGAGAACCACCTGGCGTCCAACATCCACAAGAGTCGTCTGGTGCAGCAGGATCTCCGGGTGGCCAAGCGTCTCCAAGAAGAAGAGGACCAGCGGGCCAAAGCCCAAAGTCAGAAACAGCACCAAGACATtgAACGCATTGACAACGAAATAGCTCAAGAGATTCAGGAGCAGCTGGTCCGGCAGGCCGAGAAGCAGAAGCAGCAGGAGGCTAAGGATGAGgCCATTGCTCGTAAGCTGCAGGAGCGAGAGATGAAAGAGGAACGGAGGAGGCAGAAGCAGCTGGAGGCCAAACTGGAAGAGCAGTACTATGAAGACAAAGGAGCCTACCGACCCCCTTCAGACCCTCAAGTGGAATACTCAGGCTCTGATTTGCCAGTGTCTGGCAGAGAAAGGAACCGAGAGTTAAGTCGAGGTCGATCTCCTGAACACTGGCCTCAAAAATTGGACCAAAATAGACGACTGGACAGTCATGGTAATCAAAATAGATATCCTGAATATTACCCCGTTGAAGTCAATCCCTCAAAAGTCTCAGAGCATCATAAATCAGAACAGAACCGAGGGAAAAATGAAGGTAAGGCCAGAAGACAAGTGCCTGAGCAACACCTCTCAGAGGTAAAGACTAAATACCCAGAGGAATACTTGGCTGGAAGAAACAGACACACGGATGCAGAACCACGTTACAACCAGGAACTGGCGATGACTATGAAGGAGCGAGGATATAGAGATGACCCATCAGACAGGGACAGGACAAGGAGAAGAGATCaagatcaagagagagaaagagaaagaaggagaaaaggagatAAGGCACAATACAGAGACAAAAGTCAAGATAAGCTGAATAGGGACCCCAGTAGAGACAGACTCGGGCACAAAGAAGTGGACATGGGACAAAATGGCTATAGACACAGAAGCAGAGATAGAGATGTGGAGTTGGAAATAGATAAACGTGGACCTAAGGAGAGAGTAAGGGATGGGGAAAGACATTGGAGTAGGGACAGAAACAGAGGCCGAGAGTTGGACGGTCCACCTTCCAGTAAACACTATTCAGAAGAAAGCGAGGAGAATGCAGACTACACCAGGCAGAGGCTCTACAGCAATGATGAGGTGTTTGAGGAGCCCAGATCTAGAAGTCACTCTAAAGGGCAAACCCCCAGGTACAGAGGACGAAGCGTGCAGGAGGAGTACGGGATGAGGGAAGCAATGCAAGGTTTGTCTCAAATGGACCTGCGAGCTCAGGAGCTCAGAGACATGGAGGTGGCACGCAGAATACAGGAAGAGGAGCTCATGGCAAGTAAACTTGACAAACGAGCTGCTCAAGTTGCACAAGATGAGGAAATAGCGCGACGATTcatggaggaagaggaaaggGAGTACAAGAagtctagagagagagagagacagcagagacgACCCGAGGGGGACTCCAGGccCACAGAGGAGGAAATGGACCGACCACGAACACGAGAGGAGTATGACTACCAAAAGGCTCGGAATCCAAAATCATCCAGACCTCCACCACATATCCATAACTATGTGAATGTTGACTCCAGTTATGCTTATTCAGTTAACTACTCCCCTCGCCCGCCTTCCAGACCCGAGGCTGCTTACAAAGGTGCCTACTACAGACAGTGACTTGAGGCCCTTGCTGTCATTTCATGATTTGTGCtgtacttctgtttttttcttcactttttgaAGATTGCTGTATACTGCTAGCAGGAGGTTGTGGGGTCTGTTTTTACGCTGATCTCATATAAACCACCAAGTCCAGACTTTTGAATACACAAATGTATTGTCATATCTCCGTGTGCACGATGACCAAACACTCATTTGTTGTGCATGTTTGAAAATTTTTGACAAcaatgacagattttttttatttatttttaatttatgttttgtaAAAACAGACATGAAGATCATATAATTTACTTTTCTAGATATTACATTGTTGTGATATTAGTGTTGTAATTAGTAAATGTATTTActgccacatacacacattagcCATGCCAGTATGTCGGCAACGGATGTACACTTCCTTTTCACGCCAGCAGGTGTGTGTCCTGCGTGTTGTTTTTTCGGTCACAACCTTGCATTCAACTGCGCATGGCAATTATGTCTGCAAAGACAAATGCAACAGTATACACAGTACGGCAGTGAGTATTTACTGCTCATCATGGCATGTGTTAGATTGTTTTCAGTCCAAAATGATCTGTCATACAGAGTTTTTTCCATCTGCATTTGTTCAGGGAAATGTACAACATGATTATTTGGACTACTTGTCTCCCTGTGTAGAACTGAAAGACAAACATCAGTTAAATTCCTTTGGTACAGTATTAGTGCCTCTACTATACTAGTGTTCAGCTGCCAGTACTATATGCCTCTATCTTACATTCATAACCATGAAAACATCACTTATCTGTCACTGAAGGATTGAACATGCTACTATGCTGAAGTAAAGTTACTGAGTATTATtcaacagtttttcttttttgaactGATTTATTTAGTATGTATATTTTAGTGATGATTCTTCATAATAAGATATAAAATTGTCCATGATCTAGCGGAAATGCCTTGCCTGTTCTTTATCTGCCAGAAATAAAGGGTATTGCATTCATGTTTTTCACTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221284 lncRNA upstream 36125 24153115 ~ 24203702 (+) True G186949
TU221282 lncRNA upstream 36125 24156602 ~ 24203702 (+) False G186949
TU221283 lncRNA upstream 36125 24157122 ~ 24203702 (+) False G186949
TU221287 lncRNA upstream 37261 24193341 ~ 24202566 (+) True G186950
TU221319 lncRNA upstream 53373 24161268 ~ 24186454 (+) True G186976
TU221643 lncRNA downstream 247920 24511672 ~ 24512168 (+) True G187257
TU221647 lncRNA downstream 261932 24525684 ~ 24549720 (+) False G187258
TU221648 lncRNA downstream 261932 24525684 ~ 24552314 (+) True G187258
TU221640 lncRNA downstream 299711 24563463 ~ 24568611 (+) False oaz1a
TU221659 lncRNA downstream 311263 24575015 ~ 24576233 (+) True G187265
XM_026947284.2 mRNA upstream 10460 24212670 ~ 24229367 (+) True uchl5
XM_026947255.2 mRNA upstream 29064 24207958 ~ 24210763 (+) False glrx2
XM_034308811.1 mRNA downstream 11577 24275329 ~ 24319098 (+) True p3h2
XM_026947280.2 mRNA downstream 59413 24323165 ~ 24332670 (+) True LOC113547074
XM_026947276.2 mRNA downstream 74468 24338220 ~ 24381314 (+) True onecut3a
XM_026947277.2 mRNA downstream 198130 24461882 ~ 24470865 (+) True LOC113547073
XM_034308851.1 mRNA downstream 200803 24464555 ~ 24470865 (+) False LOC113547073
TU221326 other upstream 29102 24207893 ~ 24210725 (+) True glrx2
TU221328 other upstream 29102 24207893 ~ 24210725 (+) False glrx2
trnaq-uug_6 other upstream 292764 23946992 ~ 23947063 (+) True trnaq-uug_6
trnaq-uug_5 other upstream 300939 23938817 ~ 23938888 (+) True trnaq-uug_5
trnaq-cug_12 other upstream 301447 23938309 ~ 23938380 (+) True trnaq-cug_12
trnar-acg_9 other downstream 1242671 25506423 ~ 25506495 (+) True trnar-acg_9
TU222375 other downstream 1267993 25531745 ~ 25593503 (+) False LOC113523924
TU222713 other downstream 1922110 26185862 ~ 26212109 (+) False polr2l
TU222716 other downstream 1943190 26206942 ~ 26210010 (+) True G188164
TU222712 other downstream 1946807 26210559 ~ 26212109 (+) False polr2l

Expression Profile