RNA id: XM_026947292.2


Basic Information

Item Value
RNA id XM_026947292.2
length 2514
RNA type mRNA
GC content 0.43
exon number 7
gene id amh
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 24554661 ~ 24557994 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACATTAAAATCCCTCCATTCAAGGACATGGTACTCTGAAGCTATTTTGGCAGCCTGTTTCCTTCAGGAATGCAGAAGTTGTGTATAAAACTCGTTTCCATTGTTGAACCTCTCCCAAACAAGGACTTGACACGGTTGTGACTAAAAGGAAATGGGTGTGAAGATGTGCTTTTGGCCGTTATTGCTTCTGCCGCTGACGGTGGTCACAGGGCCACTGGGTAATGCAGAGACAGAGCTTAACCCAAGCGAGGACTTCATGCCAGTCCAGTCACAGTCAGGACAAAACAGAACTGAAAGGGAAACGCATGTGCGCTCTGGAGGTCCTGCCAATTGCATGCTTTCTCCCTTAAAGCAACTTTTGGAGGACATGCCATGTGTTGTGGAGAAACAGCATCACCCTGATGCACTACGTGAGGTCCTCCTTGCTTTGCAAAATGGCTGGAGTAAGGACAGTGAGCTGGTGAAGCAGGAATTAGCTCAGTTTGGATTTTGTTCACATTACGATGGTGTGCAGTATTCACAGTTTTTATCACGAATAATGCACATGGTGCAGGAAGGGAATAATGGCCCAGAATCTTTGCGCAGCAAAAAAGaACATTGGGATGTTGAAGAGGACGGGACTTTCACAGTGACCCTACACTTTGCAGAACCTGGGAAGTGTTATCAACAAACCACACTGGCTTCCATGATGCTCCTGTTTTTTATTGACTCCTGCAACACAGATGAGTTGAAGATAAAATTCAGCAGTCATGTCCTTCATCCAAACAACCAgacagtgtgtgtttctcaggcAACACATTTCCTGGTTCTTACAGGAGTTCAGACCGAGAGCTTGAGTCTTGAGCATATAAAACTGAGGATGGAAGTTCAGCATGACAGTGgtgatgtcatattttctGCCATCATGGATCGGAGGAACACCAGGTCCAATAATACACAGAGTCCGGTGATTCTTTTGTTTCCCAAAAGATCTGACAGTGAAAATGTACCTCATTCAAATGGAACATTTCTCTTCTTGTGTGAACTACAGAAGTTCTTAAATGAAGTCTCCCCTGAAGGAAATCCACTACTTGTACAAGATGAGGTCAGGACAGTCAGCCCCAGTGTTCTTCACTCTCTGCCTCCTTTAACTCTTGGAGTGTCTTCAAGCGAGTCCCTTCTTCTTGAGCTTGTCAATTCCTCAGGCCCAACTGTGTTCTACTTCCCCCGCCAGAGCTTGGGACTGAGGACCCACCGAGTGGAGCTGGCCCTAAAGCCATCACTGCTCTCTGTGCTGAAATTAAAACTAGATGAGGCTTTAGCCCAAGTGCGGATGGAAGAAGTTGGACGTGGTGCAATAGATAAGCTGCAGATTCTCCGTGTTCTCAGTGCACTTCCTGAAGATGGAGAAGAGCTGGAAACAGGTTTGGAGAACCAACGTGAGGTCCAGTACAGAGCCCTCTTACTGCTGAAGGCCTTACAGTCTGTGCTGAGTCTTTGGGCAGTAGAAAGAGCGCAGAGGGCAGCCCGAGCTGGCCAGGAAGGACCCAGGCTTAGTCAGTGTCACCTTGAGAGTTTCACTGTGTCTCTGGAGAAGTACCTTTTGGAACCTGCCACGGCCAACATTAACAACTGTGAAGGAGCGTGTGGTTTCCCCCTGATCAACGGTAACAACCATGCCATCCTACTGAACAGCCACTTCCAGAGTGGACAGCCTCTAAATCGTACACTCTGCTGCGTGCCCGTGGCATATGATGACCTGTGTGTGATTGAGCTGTACAGTGATTCCACCACCATTTCTTACAAAACCAATATGGTAGCTAAGGAGTGTGGATGTCGCTGATAATATCAGTAATGATATAAacacatatgtatattatatatatgataaAGATGCCTCACACATTAccttatatttcatttatttttgcaagtGTGCACATTTTTCTCAAAAATACAAAGTGCAGACCTGTAAGCTACTGCTATACTCTTAGACAGGCAGAGCATATCCAATCTGTCAGTCAGGAGAAAGTGTCAGAAGCACAGCTGTGCAGTGACATTTACCTCTTCTGAAGGTAAAACATCATGTGTGGATTTGCCCAGTTGTGTTTCCTGCACACACTGATACGGTCTAAAGTCCAGAGTTTCTGCTTTCTGAGGTGAATGATGATATAAAGTACTAGTATTATTTACAAGAGTGATATTGTTGAAGAATTTTTCAAATTCAGGAATTAGATGTACTCATTAGACATCGCATAAGACTTTTAGCTAAACCATTTTAGTGTGTATAATAAGTCAACAAACCAAAATAATGATGCAATAATTATCAAAGGCTACAACTAGACATTTATAAATGTCGAAGTGATTTGTGTTCAAATTTAGTAACATCAGTGCTTGTGCATGCTACTTTTGAATCAACTACATATGATAAATAGCACCAAGATAACGTATCTAAATGTCTCATTTGTTATGTATTTATAGGTTTTGTATATCTGGAGATATCagcaataaacaaaaatatatcacattGTCCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221648 lncRNA upstream 2347 24525684 ~ 24552314 (+) True G187258
TU221647 lncRNA upstream 4941 24525684 ~ 24549720 (+) False G187258
TU221643 lncRNA upstream 42493 24511672 ~ 24512168 (+) True G187257
TU221283 lncRNA upstream 350959 24157122 ~ 24203702 (+) False G186949
TU221640 lncRNA downstream 5469 24563463 ~ 24568611 (+) False oaz1a
TU221659 lncRNA downstream 17021 24575015 ~ 24576233 (+) True G187265
TU221662 lncRNA downstream 31332 24589326 ~ 24589703 (+) True G187268
TU221689 lncRNA downstream 84765 24642759 ~ 24646662 (+) True G187286
TU221707 lncRNA downstream 148173 24706167 ~ 24707504 (+) True G187294
XM_026947226.2 mRNA upstream 6454 24520342 ~ 24548207 (+) True dot1l
XM_026947228.2 mRNA upstream 6454 24520342 ~ 24548207 (+) False dot1l
XM_034308661.1 mRNA upstream 6454 24520342 ~ 24548207 (+) False dot1l
XM_026947277.2 mRNA upstream 83796 24461882 ~ 24470865 (+) True LOC113547073
XM_034308851.1 mRNA upstream 83796 24464555 ~ 24470865 (+) False LOC113547073
XM_034308773.1 mRNA downstream 5406 24563400 ~ 24568643 (+) True oaz1a
XM_026947141.2 mRNA downstream 91033 24649027 ~ 24653190 (+) True rrp36
XM_026947129.2 mRNA downstream 98910 24656904 ~ 24668500 (+) True tmem59l
XM_026947143.2 mRNA downstream 126615 24684609 ~ 24704908 (+) False ankrd24
XM_026947144.2 mRNA downstream 126635 24684629 ~ 24704908 (+) False ankrd24
TU221326 other upstream 343936 24207893 ~ 24210725 (+) True glrx2
TU221328 other upstream 343936 24207893 ~ 24210725 (+) False glrx2
trnaq-uug_6 other upstream 607598 23946992 ~ 23947063 (+) True trnaq-uug_6
trnaq-uug_5 other upstream 615773 23938817 ~ 23938888 (+) True trnaq-uug_5
trnaq-cug_12 other upstream 616281 23938309 ~ 23938380 (+) True trnaq-cug_12
trnar-acg_9 other downstream 948429 25506423 ~ 25506495 (+) True trnar-acg_9
TU222375 other downstream 973751 25531745 ~ 25593503 (+) False LOC113523924
TU222713 other downstream 1627868 26185862 ~ 26212109 (+) False polr2l
TU222716 other downstream 1648948 26206942 ~ 26210010 (+) True G188164
TU222712 other downstream 1652565 26210559 ~ 26212109 (+) False polr2l

Expression Profile