RNA id: XM_034308420.1


Basic Information

Item Value
RNA id XM_034308420.1
length 7408
RNA type mRNA
GC content 0.50
exon number 42
gene id eml6
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 5949048 ~ 5998137 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agaagaaggGATTATCCCCAGAAAAAGGGTCGGGGTTTTTTTGTCAGATGGGTTCATGAATGAAATTTAAAGGCGTTTTGTTTGTAGTTGTTGGACGGTTCGGTTGGAGCGCGCGACGATGCGGGACGGTGGAAGGAAAAAACCAGCATCTGGTCGGGGAGCGGCGATCCGGAAGCTGGGCATTAATCGTGCTGTAGATCTGATGTGAATCTGTAGGTGAAGAATTTAATCGCACTGTCTGATCACGTCTGATCTGCACCTCTAGGCTGTACACTTCCTGCTGAGTTGTGGATCAATCCCGACATTTAATCCCCACGTCAACGAGACGTTTTTCCTCTTACACTCAGATTAGCACTACTGGATTTCTGCTCTTTCTGAGTTAATGCTTTATTTCTGATGCCAGTCTGTTTATACTCAATCAAAATGCTCGATTTGATCCTGCTGTGATTTCTGAAACCAAATATTTCCAAGACGCCGCTCCTCCGTAGGCTACACGCCCCCTACATTTTATAGTccagGCATTAAGGAGAACAGGGACTTGTACCGGTACTCTGATGCTTCGCGCGTGAGCCAGACGGTGGCGCTGAAGAGGGCGCAGGCATGGCCGATAAGACCGCACCACGCTGCCAGCTCCGGCTCGAGTGGGTTCACGGCTACCGGGGCCACCAGTGCCGCAACAACCTCTACTACACGGCGGGGAAGGAGATCGTGTACTTCGTGGCCGGGGTCGGCGTGGTGTACAACACCCGGGAGCACACGCAGAAGTTTTACCTGGGTCACAATGATGACATCATTAGTCTTGCTCTGCACCCTGATAAGATCCAGGTGGCCACGGGTCAAGTCGGAAAAGATCCGTACATCTGTGTGTGGGACTCATACACGCTGACCACCGTGTCCATCCTGAGAGACGTGCACACACACGGTGTGGCCTGTTTGGCTTTTGACACtgatggacagCGGTTGGTGTCTGTTGGCCTCGATGccaaaaacacagtgtgtgtatgggacTGGAAAAAAGGGCGTGTCCTGGCCACCGCCACAGGGCATTCTGATAGGatcttcgATATTTCTTGGGATCCTTTCCTGCCGCACAGGCTGGTGAGCTGCGGAGTGAAGCACATTAAATTCTGGACATTATGCGGCAATGCATTGACACCCAAAAGAGGGATCTTTGGGAAGACGGGAGACCTGCAGACTATCCTGTGTTTGGCGACGGCAAAGGATGAGGTGACATACTCGGGTGCATTGAACGGAGACATCTACGTGTGGAAGGGATTAAACCTGGTGCGGACCGTGCAGGCAGCTCATGGGGCCGGGATCTTCAGCATGCACTCGTGTGAAGAAGGTTTTGCCACTGGGGGACGCGACGGCTGCGTGAGACTCTGGGATGTGGACTTTAAACCCATCACCAAGATTGACCTCAGGGAGGCTGAGCAGGGATATAAGGGTCTCTCTATCCGGAGCGTATGCTGGAAGGCTGACCGTATCCTAGCCGGGACGCAGGACAGTGAGATTTTTGAGGTGATGGTGCGAGACAGGGATAAACCTCTTCTGGTCATGCAAGGTCACTCCGAGGGCGAGCTCTGGGCTCTGGATCTTCATCCCAAACAGCCGATCGCAGTGACAGGCAGCGACGATCGATCCGTCCGGCTTTGGAGCCTGGCTGATCACACCCTCATCGCTCGCTGTAACATGGAGGAAGCTGTTCGCAGTGTGTGCTTCAACAACGACGGCTCTCAGCTCGCTCTGGGCATGAAGGACGGCTCGTTCACCGTGCTGAGAGTCAGGGACATGACAGAAGTGGTCCACATCAAGGACAGGAAGGAGGTGATTCACGAGCTGAAGTTCTCTCCGGATGGCTCCTACCTTGCTGTGGGGTCTAATGATGGCCTGGTGGACATCTACGCCGTTGCACAGCGCTATAAAAAAGTGGGCGAGTGCAACAAATCCTCTTGCTTCATCACCCATCTGGACTGGTCTGTAGACAGCCGCTTCCTGCAGACCAACGACGGCGCAGGGGAGAGATTGTTCTACAGGATGCCAGCTGGAAAATTCCTTCCTAAAGAAGAGGCCAAAGGGATTCACTGGATGACCTGGACCAGTGTCTTAGGTCCAGAGGTCAATGGGATTTGGCCCAAATACTCCAATGTTAACGATATCAACTCTGTGGATGCCAACTACAGCAACGCCGTGCTGGTGACCGGCGACGACTTCGGCCTTGTCAAGCTCTTCCGATTCCCATGTCTTAAAAAAGCTGCCAAATTTAAGAAGTACATCGGTCATTCCGCCCATGTCACCAACGTGcgctggtcacatgacctgcaATGGGTGGTGAGCACGGGCGGAGCTGACCACTCTGTGTTCCAGTGGAGGTTTCTGCCTGAGGGTGTGATGAACGGCGTGCTGGAGCCACTTCTGCAAGAGGGCTACGCCGACTCCAACAGCGGTGAGTCAGACTCAGACCTCTCTGATGTTCCCGAGCTGGACTCGGATATTGAACAGGAAGCTCAGATGAACTATGAACGTCAGGTGTATAAGGAGGATCTGCCTCAGCTCAAGAAGAAACTGGTGGGCTCTCTGAAAAGGCAGAAAGCTCCGGATGAAGGACTGCGGCTGCAGTTTGTCCATGGATATAGGGGTTGCGACTGCAGGAATAATCTGTTCTACACGCAGGCCGGGGAGGTGGTGTATCACGTAGCCGCTGTAGCCGTGATCTATAACAGACAGCAGCACAGCCAGCGCTTTTACCTCGGCCATGATGACGACATCCTCAGCCTCACCGCACATCCAGTGAAGGATTATGTAGCCACAGGGCAGGTGGGCCGAGACCCAGCCATCCATGTTTGGGACGTCCAGACACTGAAGTGTTTGTCCTTGTTGAGAGGGCAGCATCAGAGAGGAGTGTGTGCTCTGGAGTTCACAGCGGATGGAAAGAGCCTGGTGTCTGTAGGCATCGATGAAGGTCACTGCATAGTGATATGGGACTGGAAGAAGGGCGAGAAACTGGCCAAGGCAAAGGGACATAAAGACAAGATCTTTGTGGTGAAGGGGAACCCATTCCGTATGGACAAGTTGGTCACAGTGGGCGTGAAGCATATAAAATTCTGGCAGCACACAGGTGGCGGACTGACATTTAGGAGAGGTATATTTGGCAACCTGGGCAAGCAGGAGACCATGATGTCAGCGTGCTACGGGCGCTCGGAGGACCTGGTATTTTCAGGGGCCACCACAGGCGACGTTTACATCTGGAAAGACACAACACTGATAAAAACTCTGAAAGCTCACGACGGCCCTGTGTTTGCCATGTGCTCACTGGACAAGGGGTTTGTAACAGGAGGGAAGGACGGGATTGTGGAGCTTTGGGATGATATGTTTGAGAGGTGTTTGAAGACCTACGCCATCAAGAGGGCTGCGCTCTCGCCATCATCTAAAGgcctGCTGCTAGAGGACAACCCCTCAATCCGAGCCATCACTCTGGGTCACGGTCACATCCTGGTGGGCACCAAGAATGGAGAGATCCTGGAGATCGACAAGAGTGGCCCTATGACGCTACTGGTTCAGGGCCATATGGAGGGTGAGGTTTGGGGTCTCGCCGCTCACCCCTTGCTGCCTATATGTGCCACTGTGAGTGAAGACAAAACACTGCGCATCTGGGAGCTTTCTGCTAACCATCGAATGGTGGCAGTCCGTAAACTCAAAAAAGgtggtAGATGCTGTGCCTTCTCCCCGGATGGGAAAGCCTTAGCAGTGGGTCTGAATGACGGCAGCTTCCTGGTAGTTAATGCGGATACTCTGGAGGACATGGTGACGTTTCACCACAGGAAGGAGATCATATCTGACCTCAAGTTCTCTCAAGATGCTGGAAAGTACCTAGCTGTGGCCTCCCATGATTCATTTGTGGACATCTACAATGTATTGACAAGTAAACGAGTGGGTATCTGTAAAGGAGCGACCAGCTACATCACCCACATCGACTGGGACACTCGTGGTAAATTGCTGCAAGTAAACACTGGTGCCAAAGAGCAGTTATTTTTTGAAGCTCCCCGTGGACGGAGACAGAACATCTCCACTGCtgagTTTGAGAAGGTGGAATGGGCCACATGGACATCTGTTCTAGGCGCCACATGTGAGGGAATCTGGCCTACACTTAGCTTTGTCAACGCCTCCTCACTTACCAAAGACAGGAAGTTGCTAGCGACGGGAGATGACTTCGGCTTCATCAAATTGTTTAGCTTTCCCTGTAAGGGTCAATTTGCCAAGTTTAAAAAGTATGTAGGCCACAGTGCCAACGTGACGAATGTTCGGTGGTCAAATGATGACACTACACTGCTGTCAGTGGGCGGGGCTGACACAGCGCTGATGATCTGGGCAAGAGAGGGGATTGGACCACGTGAGAGCAAAGCTGTTGACAGTGAGGAATCCGATGACGACGCAGAGGAAGATGGAGGATATGACAGTGATGTGGCCCGAGAAAAGAACATGGACTACACCACGAAAATCTACGCCGTCAGCATCAGAGAGATGATGGGTGTTAAGCCACACCAACAGCAAAAGGAGATTCTAGTGGATGAGAGGCCGCCAGTAAGCAGAGCAGCGCCGCTACCTGAGAAACTGCTAAAGAATAATATCACTAAGAAGAAGAAACTAGTGGAGGAACTGGCACTCGACCATGTCTTTGGATACAGAGGCTTTGACTGTCGTAACAATCTGCACTACCTCAACGACGGAGCTGACATCATCTTCCACACAGCTGCTGCAGCTGTGATCCAGAACCTCTCTGCTGGCACGCAGAGTTTTTACCTCGAGCACACAGATGATATCTTGTGCCTCACCGTCAATCAACACCCCAAATATCAAAACATCATTGCTACAGGCCAGATCGgCTTAGCCCCCTCCATCCATGTGTGGGATGCAATGAGTAAGCAGACCCTATCAGTGCTCCGCTGCTCCCATGCTAAAGGAGTTGGCTATGTCAACTTCAGTGCCACCGGCAAGCTGCTGCTGTCTCTTGGAGTAGATCCAGAGCACACCATCACCGTGTGGCGCTGgcaggaagGAACTAAAGTGAGCAGTAAGGCCGGACACTCGGATCGCATCTTCGTGGTGGAGTTCAGGCCAGATTCGGACACGCAGTTTGTGTCTGTTGGGATCAAACACATCAAGTTTTGGATGCTGGTTGGAGGCTCGCTGCTGTATAAGAAGGGTGTGATTGGAGCAGTGGAGGAGGCCAGAATGCAGACTATGCTGTCTGTGGCTTTCGGTGCTaatAACCTGACCTTTACTGGCGCCATCAACGGAGACGTGTATGTCTGGAGGGATCACTTTCTGGTGCGTGTGGTGGCCAAAGCTCACACTGGACCCGTCTTCACCATGTACACCACCCTCAGAGATGGACTTATAGTCACCGGGGGCAAGGAGAGACCGACTAAAGAGGGCGGAGCAGTGAAGCTGTGGGATCAGGAGATGAAGAGATGTCGGGCATTTCAGCTGGAAACGGGTCTCCCTGTAGAAAGCGTCAGATCTGTTTGCAGAGGAAAGgGGAAAATCTTGGTGGGAACAAAGGATGGAGAGATCATAGAGGTGGGAGAGAAGAACGCTGCATCCAACACACTGATAAATGGACACACACAGGGGCGCATCTGGGGTCTGGCCACACACCCCTGCAAAGATCTCTTCATCTCAGCCAGTGATGATGGAACCATCCGTATCTGGGATTTAGCAGACAAGaaaCTTCTGAACAAGGTGAGCTTGGGTCACCCGGCCAAGTGCACAGCGTTCAGTCCTAACGGAGAGATGGTGTCCATCGGCATGGAGAATGGAGAGTTTATCGTCCTGCTTGTCAACTCGCTCACTGTGTGGGGCAAGAAAAGAGACCGCAGTGTGGCCATTCAGGACATACGattCAGTCCTGATAATCGGCTCTTGGCCGTGGGCTCTGTGGAGAGCGCTGTAGATTTCTATGACCTGACGCTCGGCCCCGCCCTCAACCGCATCGGCTACTGCAAAGACATCCCCGGCTTTGTCATCCAGCTCGACTTCTCCGCCGACAGCAAGTTCATAGCGgtttctACAGGAAGCTATAAGCGTCAGGTGCATGAGGTCCCTAGTGGGAAGATAGTGACCGAGCAGGCCTTTGCTGATAGAATCACCTGGGCCACCTGGACCAGTGTTCTCGGTGATGAGGTGTTGGGTGTTTGGCCACGAAATGCTGACAAGGCTGATGTGAactgtgcctgtgtgtctcaTGCTGGACTCAACGTGGTCACCGGAGACGACTTTGGCCTCGTCAAGCTCTTTGACTTCCCTTGCTCTGAGAAATTTGCCAAACACAAACGCTACTTTGGCCACTCGGCTCACGTGACCAACATTCGCTTCTCCTACGACGACAAATACGTGATAAGCGTTGGAGGCAACGACTGCAGtgtgtttgtgtggcgaTGCCTGTGATGGGATCTGACCAACAGCAGAGGAGAAACGTTTCCGGAGCATCTCCTCCTCTGTACCTCTAGTAAATAAATGCTGCACACCTTCTAATGCTGCATCTGATCAATGAAGGTTATGAACTTGGACTGGAACTTCGGCTGATCTTGCTGTCGTTCTGAACcagaaaaaatgtttcatcaccattctgtgtaaaaaaatatatatataaataaagtgcaatGTTTACGTGCTCATGTACTTTCATAAACatggagttaaaaaaaacatactaatCATGCCAATatttaaatagataaatgtattattttttggtTGACATTGAGTGCCTTAAACACACTGTTGCTGAGTTGCGCCCACGTACATGATTTAATGATGCATATCTGGTGCTATATGGGACATGTTCGATTTTAGGGCTTTGAATGGTCTGTAAAACTTCATCACATTATGcaaactgttcattttttttttactttatattttgtacattattgTATCTAGTTACACTCTCTAGCTCTTCCTCTGATGTAatatttatccaaaaaaaaaaaaaaaaaaatcctcggGACTCAGGAGCCTGTTATGGCATAAGCACTGTAACGGAAAATTTGTAGATGTTTTTCGACGTGTGCTATTTTTGTTAAAAGATCCGATTTATTTTTACGTGTGTACGTATTAACGTATGAAGTATGCAACTCAATTGgtcacttaaaaaaaagcaaaaaactcCAAACTTAGTAGGAAATTGGTGTAACGACGTTTTGTGTATTGCGATGCGCAGTTTGTAGCCAATGGTGTGATGGCAAATGTGTCTGTTGTGTACAGATATCCAAAATAATATCTGTAATGTGTCtctgtttttgtattgtatGTCAAGATAGAGCTAAATGTACCTGAAAGCTATAAAATGCATGATTTTGACATTGTGTCATGTTCTAATGTTATAGATGAGTGAATGGTATtaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208989 lncRNA downstream 234028 5631826 ~ 5715020 (-) True G176556
TU208744 lncRNA downstream 541949 5304614 ~ 5407099 (-) True G176354
TU208726 lncRNA downstream 835780 5110114 ~ 5113268 (-) True G176336
TU208332 lncRNA downstream 1101907 4840748 ~ 4847141 (-) True G176029
TU208331 lncRNA downstream 1108355 4839988 ~ 4840693 (-) True G176028
TU209305 lncRNA upstream 84691 6082828 ~ 6167802 (-) True G176817
TU209304 lncRNA upstream 174061 6172198 ~ 6176354 (-) True G176816
TU209329 lncRNA upstream 186198 6184335 ~ 6188288 (-) True G176832
TU209358 lncRNA upstream 262660 6260797 ~ 6261240 (-) True G176855
TU209451 lncRNA upstream 359437 6357574 ~ 6358087 (-) True G176938
XM_026930297.2 mRNA downstream 19919 5924209 ~ 5929129 (-) True LOC113536410
XM_026930734.2 mRNA downstream 90722 5854377 ~ 5858326 (-) True rbbp9
XM_026930587.2 mRNA downstream 105205 5830751 ~ 5843843 (-) True srsf11
XM_026930588.2 mRNA downstream 110769 5830751 ~ 5838279 (-) False srsf11
XM_026930735.2 mRNA downstream 162504 5781225 ~ 5786544 (-) True plaat1
XM_026930527.2 mRNA upstream 3554 6001691 ~ 6084807 (-) True sptbn1
XM_034308409.1 mRNA upstream 87535 6085672 ~ 6094778 (-) False LOC113536414
XM_034308408.1 mRNA upstream 87535 6085672 ~ 6094761 (-) True LOC113536414
XM_026930301.2 mRNA upstream 87535 6085672 ~ 6094760 (-) False LOC113536414
XM_026930304.2 mRNA upstream 101892 6100029 ~ 6109372 (-) False LOC113536415
TU209010 other downstream 240783 5696458 ~ 5708265 (-) True LOC113536561
TU209012 other downstream 240783 5696458 ~ 5708265 (-) False LOC113536561
trnai-uau_2 other downstream 634794 5314162 ~ 5314254 (-) True trnai-uau_2
trnai-uau_1 other downstream 658454 5290502 ~ 5290594 (-) True trnai-uau_1
TU208736 other downstream 752230 5191964 ~ 5196818 (-) False trip4
TU210154 other upstream 1483312 7481449 ~ 7483958 (-) False si:dkey-56d12.4
XR_004579066.1 other upstream 1582297 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579065.1 other upstream 1582297 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579064.1 other upstream 1582297 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579063.1 other upstream 1582297 7580434 ~ 7588815 (-) True si:ch1073-365p7.2

Expression Profile