RNA id: XM_034308435.1


Basic Information

Item Value
RNA id XM_034308435.1
length 2319
RNA type mRNA
GC content 0.52
exon number 11
gene id tub
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 201128 ~ 263060 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTGCTGTATCGGGAACGCGCAGGAAAATAACCGGCTCTCATTTCATTTAGGAGTGAtatcactgagagagagagagagagagagtgagacagagtgagacagagagagagacagagtgagacacagcGCTTGTGGGAGGATGATGGACGGAGTGAGCAGCAGTAAGAGCATGTCCTACAGCCGCTGGAGTTATGACAGCACCCTGGATGATGAGTGCAGTAACCTCCGACAGCAGAAGCTGGACAGACAGCGAGCTCTCCTAgagcagaagcagaagaagaagcgTCAGGAGCCTCTGATGGTGCAGTCGAACCTGGACGGTCGCTCTCGGACCCGCAGAACCCGACAGTGTGAGGAGCAGGCGCCGCTCGTCGAGTCCTATctcagcagcaacagcagcaccaTCTACCATGGAACTCACGGACCAGCGGCGTTCCAGGACGAGGCCCAGGACCTGAGCAGCCAAATCCAGATTCTCACAGTGGGACATTCCGCTGGACACGACAGCGACACTGAGGTCCAGAGCAAAGCCGCGTCTCAGACTCAGAGCAAGCAGGACCTGCGGGTCACAATGCTCAAGAAAGGAATCTCCAGCAGCATGAATTTTGATgaggaagaagatgatgatgatgatgatgaagtgagCTCCAGTTCTTCTCAACTCAACAGCAACACCAGACCGGGTTCGGCCACCAGCAAGAAGTCCAGCAAGGAAGCAGCTTCAGCTTCGACTCCGGTGACCAACGAGCCGTCTGTCGATGTGGGCGATCTGGAGGAGTTCACCTTGAGGCCGGCGCCGCAGGGCGTGACCATCAAATGCAGGATCACGCGGGATAAAAAAGGAATGGACCGGGGCATGTACCCCACCTACTACCTCCATCTCGAAAGAGAAGACGGCAAGAAGATGTTCCTTTTAgctgggagaaagagaaagaagagcaaAACATCCAACTACCTGATCTCCATCGACCCCACTGACCTGTCGAGAGGCGGCGAGAGCTTCATCGGGAAACTCAGGTCGAACCTCATGGGCACCAAGTTTACAGTTTACGACAGCGGGACGAACCCGGCGAAGAGCACGTCCAGCTTAGAGGCCAGCAACCTGCGTCAGGAGCTAGCAGCTATCTGCTACGAGACCAACGTGTTGGGGTTTAAAGGCCCTCGGAAGATGAGCGTCATTATCCCGGGAATGAACATGGATCACGAGAGAGTCTGCATTAGACCACGGAATGAGCATGAAACGCTGCTGGCTCGCTGGCAGAACAAGAGCACGGAGAGCGTGATCGAGCTCCACAACAAGACGCCGGTGTGGAACGATGACACTCAGTCGTACGTGCTGAACTTCCACGGCAGGGTCACTCAGGCCTCGGTGAAGAATTTCCAGATCATTCACGACAACGACCCGGATTACATCGTGATGCAGTTTGGCCGAGTGGCCGAGGACGTCTTCACTATGGACTACAACTACCCCATGTGCGCGCTGCAGGCCTTCGCTATCGCTCTGTCCAGCTTCGACAGCAAACTGGCCTGCGAGTAACTCCGTGATCTGAAGACGAGTGGACGTGTGAGAGGACGTCCTGATTCCCTCAGACGGACTCGGAGACCTGCAGGAGTCCTGATTTAATGAAACCCTCTGTGGAGCACACAGGAGCTCAGACTGACCGCACGCCGGACCTGCCAGAGCTCCTCTCTGCTCTTCGGGACGACGGTGCGGGACCAAGCACAAAGCCGACCCGCCTGCACGGCCGTGTGGCTCCTTCTCATGTTCGATTTTCatgttaaaatgaattattgtgTAACTTCAACGCTACGGCACATGCGTTTGTATTAGCGGTGAAATCTCTTCGTCAGTCTCATCGCTGCAGTTTTCTGAGTAACGCTAACGCTGAACATGCTAACTTCACCACGATCACTTCCTAACGAGGCCTAACATCACTTTATATACTCAGTCATTTTAACATCTTAATGTTGGACTTACTCTAATTTTGTAAAGtaatactgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtgtgtgtgcgcgtgtgtgtgtttatgactaACTTCAGCCATGTAACGTGTCATTGCAATGCTTTATGACAGCTTCATGCCGTCTGTGTGAAGTGTtttgtatttctattttatttatgtatttatggatCATTCCTCTCGCTGCTGTGATTTTATTCAACACCACATGAACACTTaacactcagcactcaacactcaacactcagcactcaacactcagcactcaacactcaacact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205446 lncRNA upstream 83829 117097 ~ 117299 (+) True G173525
TU205465 lncRNA downstream 306 263366 ~ 263913 (+) True G173543
TU205591 lncRNA downstream 71968 335028 ~ 335754 (+) False G173662
TU205592 lncRNA downstream 71968 335028 ~ 335754 (+) True G173662
TU205609 lncRNA downstream 184630 447690 ~ 447950 (+) True G173679
TU205662 lncRNA downstream 270115 533175 ~ 534931 (+) True G173724
XM_034308652.1 mRNA upstream 6637 155529 ~ 194491 (+) True rras2
XM_034308653.1 mRNA upstream 6637 167046 ~ 194491 (+) False rras2
XM_034308862.1 mRNA upstream 60556 119795 ~ 140572 (+) True copb1
XM_026930346.2 mRNA upstream 160024 37138 ~ 41104 (+) True LOC113536444
XM_026930652.2 mRNA downstream 380759 643819 ~ 647035 (+) True slc7a6os
XM_034308878.1 mRNA downstream 482903 745963 ~ 758953 (+) True LOC117598424
XM_034308879.1 mRNA downstream 527314 790374 ~ 822723 (+) True ccdc102a
XM_026930339.2 mRNA downstream 589247 852307 ~ 894448 (+) True dok4
XM_026930340.2 mRNA downstream 589764 852824 ~ 894448 (+) False dok4
TU205686 other downstream 305753 568813 ~ 570326 (+) True G173748
TU205778 other downstream 478961 742021 ~ 742710 (+) True G173819
TU205870 other downstream 1098722 1361782 ~ 1364931 (+) True G173898
TU206587 other downstream 1795910 2058970 ~ 2060283 (+) True G174536
TU206600 other downstream 1815017 2078077 ~ 2078627 (+) True G174546

Expression Profile