RNA id: XM_034308463.1


Basic Information

Item Value
RNA id XM_034308463.1
length 3783
RNA type mRNA
GC content 0.42
exon number 17
gene id si:ch73-40i7.2
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19509033 ~ 19524997 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGTGGTATTTTAAGACTACTGTATGTTTGCAGTGAGAGCAATATTTAACTTGGGTAatatgttacacacacacacacgaggaaATTGGTGTGTAGTGTGCCTAGCTGACGTATTTCAGCTTATTCAGGTGAAGTAAACCGCAGATCTGCATGCGAGCTCAGAGGGCTGTATTTTCCACACCGGCTTTATTTCAgggtttatttctattttcacTGATATACTGATGTCGGGTTTTCTCACTGTTGCCTGTCATTCTCTTGACAAAGCAGTAGTGCTTGGTTAGGCTTGTCTCTCTGCTAGTTTATCTTCACCTCGGGTTGATACAAGAAAAGTCATGGAGCCTGTACGGAAATAAAAGTCCACTCTAACCTACATGGGGGACAATGTAGATGTCAAGGCCCTGAGGGCCAGGTTTCATTCCCAGGCAGAAAGGGCCACCTCCAGTGGTGGAGCTTACTCCAGGCCTCATGTGGCTGCTCATTTGCCGGAGACATCGGACAATGGAGTGGTCCGAAGCAAGCCTTCACCTGCAGCTCCAAAGCCAGTGTTTCCAGTGAACCCCAGCACTGAACCCAAGAAGTTTAGTCAGACTCCTCAGGGACTGTTTCCCAAACCTCCACCCTCTCACCGTGTGGGAGCTAAAGAGGATCCTAAACCGCCTGTCAATGACTCTGAGAACACAAAGAGAGTAAAACTGACAGGGGAGCTTCTCCAAAACAAGATGCTGCAACATCTTGAGAAGAAGCCCCAATCACTTCCCAGATCAGCACTGCCAAGCCAGAAGAGCATCACAGAGGTAGCTCCCCTGAGAAAACCACTTCCCAATGTTGGACAACGACCTGCAAAGCCCAAAAGACCCCCGGTTGTCAGCCTGGATCGTTTTCGTGTAAAGGGTCCAGCCGTTCAGCGCACAGTCCATCTAGATCCTAAAACACCTGAAGGGCCAGCCACGACCACCAAAAGCAACTTTCCTGTCTGCGCCACAGCCTGTTCCCAGAGAAACACCGAACCTGAACAGGACACATACGATGACATCGATTTGCccccacctccacctccacctccaaaACCATCTTCCAGTGAATCATGGACAAGCAGTTTCTCGTCTCAGGCTGATGAGGAGAGCGATCATAGTGAAATTTATGAGCATATCGAGGATCAGGAGGAGACTGCACAGCCTGTGGTCccagagaagaaaaaacaaaaagaacacaaaCGACAGCAAGTGgaaaagagagagcaaaaagagaggctgaaaaaagaaaatgaataccgaaaaaaattcaaaCTGACTGGAGAAGTCGAGGTGCTCCACACAGCTCGGGTGAGGGAGGACTGGCAAGGCGGGAAGAACGATCTGCGTGTGCGGCAGGGAGAGGCTGTGGAGATTGTGCGTGTGAAGAACAACCCCGAGGGAAGATGGCTGGCCCGAAACATGAGTGGGGAATaTGGATATGTCAGTAACACATGTGTAGATGTGGACTATGAAGAAATAAAGCGAAAGATTCGCAGTGAAGCTGCTCCTCCTCCCCTTCCTCCTCTTGTCCATGAGGACGAGTATGTCTACGATGATGTCGGCGCAGACACACTGAACAGCAGGCTAAGTGTGAGCGGTGAGGTATATGATGATGTTGATCATGTCATACCGGATGACTTCCCCCTGCCCCCTCCGGAGATATGCCAAACCCTGCCAAAAAGCAAGAAGctagaaaaggaggaaaaggagttCAGAAAAAGGTTTAAGTTTGAAGGCCCCATCCAAGTTCTTTGCTCTATGATGGTGGATCCAAATGCCAACATCAAGAAGGGCGGTGGGAAGGACCTCTCTGTTGTGAAGGGACAAATTCTTGAAGTCATCCAGCAGACTAATGAGAAGAAAGTACTCTGTCGGAATGAACACGGCAAATATGGATATGTTCCTAGACATTACCTCCTACATGAGgaaaatgaaatatatgatGACATTGACAACATGACAGATATTTATGATAACGATGTCAGTGGACCAGTACCACTGCGGTCTTGACAGCCATTAACAATGCTATGATGGAGAAGATGGATGGAAAAGACAACCTGATGATACTCGTTCGTGTGTCTCGTGGACATGAGGACAATGGAGGATGGAGGATCAGGAGGATCATTCAAGAAAATGTTGTACAttgaagaaataaatacatgtttttactaatctgtgatattttacattcttacattttatattacgGATACAAATTAGCAATCACCTAATCACCAGTAATCACCTGGTCAGACTTCAGCTATTAATTGCAGAACATATATTCCCATAAACAAATTgcaaattctgttttattagcATGTTCTTATGAAAAACATACCTTTTTCACAAATGATGTTATTAAACAGAAAACTGTCACATAAGACATGGGAAAGAACTGACTGTCTCCATAAGGTCTCTAAGGGCCAAGCATTTTTTGAAGCAACACCATcttgaatataaaaatatactttgTAGAAGAGATAACAGACATTaatgtgttaatatattaatatatatatagaacaaAAGAATTTGACTAAATGTCTTAAGAAATAATTATTCttacaattatatttagcaaTATTTTCGGCCTCACAGATCACAATCAGAAGTTCCTGAAGGTTTTGAATAAAGGTAGTAAAGGTAGTGTGAAAGTACATCAGTAAAAtctaatgcagtatttttgaaaaattgctGGACAAGTGCCTTCTTCCATTAATTGTGAGCCATAGCTACTTCCTGGGTGTCACTAAGACAAGTTTAACTTTTGGACATTTGCAGTTTTTATCCTCAGTAGAAGATAGAGCTCAATCTTAAGCCATTTTTATCCTCAGTAGAAAACAGCCTCAGCATTTcgagtgattctcatcctcaatacAGCATGACATCAGCACTATTTGGGAGTCCATGACTGTCTTGCATGGTGTACTATTGGTATGTGGCCTCCACTAGTTCTGCAGGAAACCGCCCTGGTGGTCGAGACCCATGCTTTGATGAATAATTAGAGGAACATTTATAGAAATGTGAGAGAGAATGCAAGTCAACATGTAAACAATTTAACAAAGCATGGGTGTAAATCCAATACGCTGAGTcattaccacaaaaaaaaaaaacaacaacaaatcactgttTCTTGTAATTGATTATTCCAAATACCTAACAGACTGTAATGTATAAACCCCCACTTATTAGtagaaccatggttacatgcagGCCCCtctaaaagtattggaacagcaaggctaattcttttgttgttgctatacactgaagacatttggagtTGAGATTAAAAGATGACTTTGAGATGATagtttagaatttcagcttttatttcctgatatttacatctggttgtgttaaataacttagaacatggcactttggtagcagaccacccaatttttaggtgaacaaaagtattggaacagatagtcttaaagtaaataactttTAATATTTGGTGGCATATCCCTTgaaactgcatcaagctggtgacctgctgacatcaccaaattgcattcttcttttgtgatatATTTCCAGGcttgctcaattgggttaaggtctggtgattgacttggccagtctaaatcCTTCtacgttttttttccctgatgaagtcctttattgtgctggcagtgtgttttgggtcattgttttgCTGCATGGTGAATTAGATTAtatgtgtttctctgtaaattggcagaatgtttctgtagacctCTGAATTctttctgctgctaccatcatgagttacatcatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218362 lncRNA upstream 21255 19486372 ~ 19487778 (+) False smim7
TU218363 lncRNA upstream 21255 19486372 ~ 19487778 (+) True smim7
TU218369 lncRNA upstream 46190 19461824 ~ 19462843 (+) True G184503
TU218370 lncRNA upstream 47343 19459818 ~ 19461690 (+) True G184504
TU218173 lncRNA upstream 427548 19081252 ~ 19081485 (+) True G184340
TU218480 lncRNA downstream 1880 19526877 ~ 19545502 (+) False LOC113546543
TU218491 lncRNA downstream 23666 19548663 ~ 19602639 (+) True G184614
TU218492 lncRNA downstream 23666 19548663 ~ 19550326 (+) False G184614
TU218481 lncRNA downstream 28980 19553977 ~ 19554818 (+) False si:ch73-40i7.5
TU218499 lncRNA downstream 136095 19661092 ~ 19664491 (+) True G184617
XM_026929979.2 mRNA upstream 3932 19498363 ~ 19505101 (+) True slc35e1
XM_026928296.2 mRNA upstream 13132 19490432 ~ 19495901 (+) True LOC113535100
XM_026923920.2 mRNA upstream 21249 19486328 ~ 19487784 (+) False smim7
XM_026930849.2 mRNA upstream 50859 19442164 ~ 19458174 (+) True crtc1b
XM_034308528.1 mRNA downstream 2049 19527046 ~ 19531687 (+) True LOC117595669
XM_034308909.1 mRNA downstream 18472 19543469 ~ 19548212 (+) True LOC113546543
XM_034308397.1 mRNA downstream 25649 19550646 ~ 19554969 (+) True si:ch73-40i7.5
XM_026922544.2 mRNA downstream 30715 19555712 ~ 19584739 (+) True zgc:172302
XM_026922570.2 mRNA downstream 62331 19587328 ~ 19597392 (+) True r3hdm4
TU218227 other upstream 239811 19254957 ~ 19269222 (+) False adgrl4
TU217312 other upstream 1712414 17795445 ~ 17796619 (+) True G183549
TU217273 other upstream 1727220 17773713 ~ 17781813 (+) False ect2
XR_004579060.1 other upstream 1757531 17672171 ~ 17751502 (+) True mcf2l2
TU218488 other downstream 7084 19532081 ~ 19553522 (+) False si:ch73-40i7.5
TU218486 other downstream 25385 19550382 ~ 19553522 (+) False si:ch73-40i7.5
TU218602 other downstream 170247 19695244 ~ 19700274 (+) True rps15
XR_004579107.1 other downstream 302989 19827986 ~ 19834414 (+) False tax1bp3
XR_003403385.2 other downstream 340801 19865798 ~ 19871463 (+) True ccl44

Expression Profile