RNA id: XM_034308465.1


Basic Information

Item Value
RNA id XM_034308465.1
length 1857
RNA type mRNA
GC content 0.39
exon number 4
gene id zgc:194981
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 5861430 ~ 5865960 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAatgctgtaatgtaatataatatactgtaatgttatgtgatataatgtaatataatgtaaagtaATACCTGAGTGTGTAAACAGAGGAGCGTCAGTGAAGCGCCTCAGAGGCAGGTCAGATAAATAGGACCCTGCTGTCGTGTTGTAGTGGCacattttatttgcagtttGGCTTCAGTGCTTATTTGAAAAGCTAAAATCTCTTTCCAAGGGAAATCAGTTAATGTGATCTGTATTATACCAAGATGACGTACGCGCTGAGCCTCGTAGCAGCTGTTTTCATGGCTCATGTTGTGTCTGTGAGCAGCTCAGAACAAAACATCGACCCAAATGTAGTCAAAGCGGCTAACTTTGCCATCGAGTTCCACAATCACATGACAAACTATCCTTATGCGTATAAAGTCGTGGAAATCCTGTCTAACTCTGCTCAGATCTACCCTCCTGCCCGGGTGAAGTACTCCATAGAAGTGCGAGCTGCTCAGACGACCTGCAGAAACACCGGCAGCGTGGACCTGGAGGACTGCAGCGTCGCGGCGAACGCACAGatgatGATCTGCAGCTTTGTGGTTCTGGCAGTTCCAGGAGAGAACACGGTTCCTGAATACGTTCTGTCACAGCACTGTGCCTGACGTGTTATTCGTCAAACCGCACGAGTAACTGCACTGTAGCTGTTTAAAAATCTACAACATTTGCTGAGAAACAGAAAGTCCTACGTCAGGAAAAGATTTTCCTTCAGAAAaatcctgtttcctgtttccttaaGAAGCTACATATTGAACAAAACATTCCTGGCATGTGGCATGcagttgtagaaaaataatcaacaacaaggtgaCAGTGCATCACAaagtgaagcggagttactgtcaccaccctgtagttgattattttcccatgaaAAGatgtcctgaagtgctttattcctcttatatcacagcagtttgcaattgttttattcattttattcaaatagTTTTTATCCgcttgtagttacatttaatattatggaacaaattaaacaagttatttcctgttatcactttagTTATAGCAGCTGTACACAGTCATCGTCTTTCCTGTGGTgtaaaacttaaagttaaagctgttacaaagcactgacactggagactccttccataagtaaacatctcctcatagaaaactttaccacaacatgtgtttttttttttttatccgtttattaaCATGAGGCTTTGATTACATGGAGTTTTCGCTGAACAAGTCCATGTGTAaattgttaccatagaaaccatGACGCTGTTATGGAAAACGAATCAACATCCTTCTGATCCGAATGCTTCAGATTCGAGAATTGAAAtttagcagtgctgtggtataagatgatcATTATTTGAACATTAGATTGGTGGTGTAATAGCACTTTCATGCACTTTTCTTCATTCTCGAAATGAATATggcattattatatattagtagtatgtaatatttatgtattataataGTATGTTACTGTGAGGATTTTGCGTATAAAATAAGCAGATGAACAGTGAGCTGCGGAGAAGGGGGCCATTACTTTATTCACAGAGATGTTCGCAGCGTGAAGTTCTCAAACTCtgcacagagagagtgtgtgtctctacagtgtatttatttacaccTGACATTGACTTTGAAAGTGGAAATGCAACAATGAGCTTCAGAGGTCACAGCAGATCAGCCACATGCGGTTATGTAGAATTATATAGAATATACTAATTGTATAAACCATGAATAATTGGTTGGAAGTGTGTGGTTCTGTTTGGGCATTTAAAAACACCACTGCTGTTCTTACTGCAATGTGCAATAATCCTGAAATAAAGGGGGAAAGAATCTG

Function

GO:

id name namespace
GO:0030414 peptidase inhibitor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209054 lncRNA upstream 4355 5855525 ~ 5857242 (+) True G176608
TU209042 lncRNA upstream 46491 5814595 ~ 5815106 (+) True G176596
TU208878 lncRNA upstream 170737 5677206 ~ 5690860 (+) True G176469
TU208838 lncRNA upstream 247269 5602656 ~ 5614328 (+) True G176430
TU208808 lncRNA upstream 351743 5505770 ~ 5509854 (+) True G176406
TU209160 lncRNA downstream 85854 5951814 ~ 5952155 (+) True G176700
TU209210 lncRNA downstream 204987 6070947 ~ 6075427 (+) True G176746
XR_004579052.1 lncRNA downstream 228243 6094203 ~ 6100027 (+) True LOC117598391
TU209478 lncRNA downstream 688634 6554594 ~ 6555007 (+) True G176964
TU209715 lncRNA downstream 993344 6859304 ~ 6860230 (+) True G177159
XM_026930348.2 mRNA upstream 7771 5845459 ~ 5853826 (+) True sirt7
XM_026930669.2 mRNA upstream 33201 5788447 ~ 5828396 (+) True ankrd13c
XM_034308805.1 mRNA upstream 34284 5788453 ~ 5827313 (+) False ankrd13c
XM_026930675.2 mRNA upstream 88681 5763807 ~ 5772916 (+) False rfc4
XM_026930843.2 mRNA downstream 1104 5867064 ~ 5888843 (+) True tdrd3
XM_026930753.2 mRNA downstream 251315 6117275 ~ 6119629 (+) True foxg1b
XM_034308728.1 mRNA downstream 301518 6167478 ~ 6174101 (+) True LOC113536615
XM_026930674.2 mRNA downstream 312472 6178432 ~ 6182676 (+) True LOC113536616
XM_034308727.1 mRNA downstream 321994 6187954 ~ 6191988 (+) True LOC113536774
TU208265 other upstream 1200461 4656605 ~ 4661136 (+) True G175977
XR_004579071.1 other upstream 1564350 4281244 ~ 4297247 (+) False nadsyn1
TU207714 other upstream 2203321 3647370 ~ 3658276 (+) False btbd10b
TU206600 other upstream 3782970 2078077 ~ 2078627 (+) True G174546
TU206587 other upstream 3801314 2058970 ~ 2060283 (+) True G174536
XR_003403680.2 other downstream 1256425 7122385 ~ 7131506 (+) False LOC113536390
TU209855 other downstream 1401924 7267884 ~ 7271320 (+) False rpl37a
trnae-cuc_24 other downstream 1736266 7602226 ~ 7602297 (+) True trnae-cuc_24
trnar-ucg_6 other downstream 2377462 8243422 ~ 8243494 (+) False trnar-ucg_6
trnar-acg_6 other downstream 2378992 8244952 ~ 8245024 (+) True trnar-acg_6

Expression Profile