RNA id: XM_034308472.1


Basic Information

Item Value
RNA id XM_034308472.1
length 3589
RNA type mRNA
GC content 0.46
exon number 11
gene id vcam1b
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 12615074 ~ 12623948 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCACAGTGAGATGGCTCTGTAGTACTTTGTAGTTCTGCACAGACTCATGATTTAATACTTAAGCTTTGTTCCTGTTAGTGGATTTAAAGAGTTTCAACATGGTTCTAGCTCTAGGTGTTACTCTGACCGTTCTCCTGCAATGCATCCTCTGCCACACACCAGTTTCCCCTCTCAAAGTGGAGCTGAGTCCAAAGAAGCCACTGTTTCGAGTAGGAGACAGACAGGAGCTCACGTGTCGAATGATTAAGTGCTCTGAGAAAATGACTTTCTCCTGGAGCAGTCTGCAGGACAAACCCCTGTATGCTGAACCCCAGACAACCTCGACTGAATCGACTCTGGTTTTCAAGAGTGTTagtaaaaatattgaaaataaaatccagTGCAAGGCAACCTGTCAGGGCACAAGCAAGCAGGCCGCGGTGACAGTCCGAGTGTACTcTTTTCCAAAAGTTCCAGTCATCTCTGGACATGACAGCTTGGTGTTAGGGAAGGAGAACAGCCTGACCTGTGAGGTTTCAGATGTTTATCCAGCAGAACACATGACAGTGGAATGGCTGAGGGGAGGAAAAGTGGTCCACACACAGGAAGGAGAATATGGCATTGAATCCATTCAGTCCTACTACACTTTTACACCACAAACCAACGACGATGGAGAGTCAATAACGTGTCGAGCCACACTCAGTCTTGATGGCTTGCCACCAGAGGAGAGAACCAGAGAGATCACCGTGTCCATGGCTGTCCTTTGTCCTCCTATGAACACAGTGATCTCTGTGTCCCCTAATAATCCAAAAGAAGATGAGTTTATGAACATCTCCTGTGTGAGTGACAGCAATCTCGCAAGCCGTCTGGTGCTGAGCAAAATGCTGGATGGAAAGGAGACAGAGCTAGTGTCTGGTGATGGGCCTCGAGTCTCTGTTTCTTACGACAAAGCCAACCTCAATCACTCAGGTGTCTATGTGTGCAGAACAACAAATGCCTgtgggagacagacagacaatgtCACCTTTACTGTTGGAATTTCCTCTTTCGAAGTGGAGCTGAGTCCAAAGAAGCCACTGTTTCGAGTGGGAGACAGACAGGAGCTCACGTGTCGAATGACTAAGTGCTCTGAGAAAATGACTTTCTCCTGGAGCAGTCTGGAGGACAAACCCCTGTATGCTGAACCCCAGACAACCTCGACTGGATCGACTCTGGTCTTCAAGAGTGTTAGTAAAAAGAATGAAGATATGATCCAGTGCAAGGCAACCTGTCAGGGCACAAGCAAGCAGGCCGCGGTGCAAGTCCGAGTGTACTCTTTTCCAAAAGTTCCAGTCATCTCTGGACATGACAGCTTGGTGTTAGGGAAGGAGAACAGCCTGACCTGTGAGGTTTCAGATGTTTATCCAGCAGAAAATATGACAGTGGAATGGCTGAGGGGAGGAAAAGTGGTCCACACACAGGAAGGAGAATATGGCATTGAATCCATTCAGTCCTACTACACTTTTACACCACAAACCAACGACGATGGAGAGTCAATAACGTGTCGAGCCACACTCAGTCTTGATGGCTTGCCACCAGAGGAGAGAACCAGAGAGATCACCGTGACCATGGCTGTCCTTTGTCCTCCTATGAACACAGTGATCTCTGTGTCCCCTAATAATCCAAAAGAAAATGAGTTTATGAACATCTCCTGTGTGAGTGACTGCAATCACGTGAGTCGTCTGGTGCTGAGCAAAATGCTGGATGGAAAGGAGACAGAGCTAGTGTCTGGTGATGGGCCTCGAGTCTCTGTTTCTTACGACAAAGCCAACCTCAATCACTCAGGTGTCTATGTGTGCAGAACAACAAATGCCTgtgggagacagacagacaatgtCACCTTTACTGTTGGAACTCATCCCCTGGAGGTGTCCCTGCAGCCAGATATGAGCGTCATCCCAGTAGAGCGAGGTTCCTCTATGATGCTGTCCTGCAATAGTTCAGGCTGTCCTCATGCTCATATAACCTGGCGAAATGTGACACATCAACCACTTCTGAGCTGGAATGACACTCGGGCATTTGTATCCCAGCTAGGCCCATGGACTCTAGGTCTGGAGGATAACCGAACATTCATTTGTGAAATTAACTGTGGCTCTGTTATGAAGTCCAAGCACACAGAGCTGAAGGTTTACTCCTTTCCTTCAGATCCTACCATCGAAAGTTCTGGACCTTTTCTGGAAGGTAAAGTGACCAACCTGACCTGTACAGTTCGTGAGGTCTTCCCTGTCGACTGTTTTCATATACAGTGGCTGGATGGAGAGCTTGAGCTACACTCAGTGCGTGGgaatttttcagacaaactgcaGAACCTTAGCTTGACTATCCCCTTCAAACCTAAGGACAGTGACCAAAATAAGACATTTACCTGCAAGGTATCATTGGAGATGGAGGGTGTATCAACACAGAAGATAGCATCTACCACACTGACAGTGCATTATTCACCCAAGCATACCACCATTGATGTGAGACCCAAGAAGAAACTGAATGAAGGGGAGACTGTGACTATCTCCTGCCAGACCGACAGTGCTCCAGAGGGACATGTGACTTTAAGCAGGGTGCAGAATGGAGAAGAGACTAAATTGGTTTCCAGTAATGGGACCCAAACCTCTTTTAGCATCTCCTTTACTAATGTGTCACACTCTGGCACCTATGTGTGTGAGGCCGTTAACAAATATGGCCATCAGAGAAAGAGTGTCCAAATTACTGTGCAAGCACCTCCAAAGAATATCAATGTGACGGTATACCCATCAAAGGAGGTACAAGAGGGCGAAACCGTCAAAATCTGCTGCCAGTTGGTGAGCTTCCCACCATCTGACATCACCTTAAGGAAACTGGACAATGGAAATGCAATCTACTCTTCTAATGGTATCTTCCTGCTGGTCAACCTCACTTCTAATGACTCAGGCCTATACCAGGTCAATGCTACCAATGCCCTGGGTTCTGAGACTGAGATTTTCACAATTATTGTAATGAGTAAGAGGAAAGATGGTGGGAATATATTCTCAGACCTGTTACGAAGACTTAATTCCATTGACTTTATAATTCCAGTCATTGGCCTGGGAATTCTGGCTACAGTAGCCAGCTCATTGGAATGTATAAGGAGAGCAAAACGGAAGGGCTTCTATGAGCTGACTGAGGGTATACCAGAAACTGTGTAGACTGCATGGACAAAAACTTAAATTGAGTCTCCTGCACTGAGCTGAAGCAGAGTCTACTGAACCTAATCAGACTCATATTCTGCTGAACTGAATCACATACTGTTCAACTGAATCACACTCAAACTCCGTTCAACTGAAATAGGCTCTGCTAAACCGAATTACTGATTGGTGAACTGATTCAcattctgaatgaatgaatcagacTCTAAATGAAACACACTCTGCTGGACTGAATTGCACTCCACTGAACGTAATCACTCTGCACTGAACTGAATCACGCTTGACTGAACTGAATCACACTCCACAAAACAAACTATGGTAACATGAATTGCACTCTACTGAACTGAATCACTTTTGGCTGAACCTTAATCTCACATTACTGAGTTGAATCACACTTGGCTGAACAGAAACAC

Function

GO: NA

KEGG:

id description
K06527 VCAM1, CD106; vascular cell adhesion molecule 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213271 lncRNA upstream 53294 12543667 ~ 12561781 (+) True cdc14ab
TU213262 lncRNA upstream 117424 12496731 ~ 12497651 (+) True G180246
TU213255 lncRNA upstream 128331 12486506 ~ 12486744 (+) True G180242
TU213207 lncRNA upstream 191923 12422702 ~ 12423152 (+) True G180205
TU213194 lncRNA upstream 221584 12392887 ~ 12393491 (+) True G180192
TU213314 lncRNA downstream 29848 12653796 ~ 12654215 (+) True G180267
TU213315 lncRNA downstream 30474 12654422 ~ 12682563 (+) True G180268
TU213659 lncRNA downstream 212920 12836868 ~ 12841282 (+) True G180516
TU213678 lncRNA downstream 227012 12850960 ~ 12851179 (+) True G180534
TU213871 lncRNA downstream 512189 13136137 ~ 13203148 (+) True G180695
XM_034308897.1 mRNA upstream 9270 12602331 ~ 12605805 (+) True LOC117598432
XM_026930763.2 mRNA upstream 24711 12587473 ~ 12590364 (+) True LOC113536666
XM_034308475.1 mRNA upstream 32912 12573157 ~ 12582163 (+) True LOC117598398
XM_034308476.1 mRNA upstream 32912 12573157 ~ 12582163 (+) False LOC117598398
XM_034308860.1 mRNA upstream 48474 12565218 ~ 12566601 (+) True LOC117598419
XM_034308640.1 mRNA downstream 21238 12645186 ~ 12666010 (+) True slc30a7
XM_026930823.2 mRNA downstream 92636 12716584 ~ 12720429 (+) True s1pr1
XM_026930647.2 mRNA downstream 98909 12722857 ~ 12732692 (+) True zbtb37
XM_026930649.2 mRNA downstream 98909 12722857 ~ 12732692 (+) False zbtb37
XM_026930664.2 mRNA downstream 180366 12804314 ~ 12837848 (+) True eps15l1a
TU213294 other upstream 13011 12573193 ~ 12602064 (+) False LOC117598398
trnag-ucc_15 other upstream 226834 12388170 ~ 12388241 (+) True trnag-ucc_15
TU213163 other upstream 281444 12328066 ~ 12333631 (+) False timm13
TU213106 other upstream 559326 12054958 ~ 12055749 (+) True G180121
TU212683 other upstream 1185736 11428613 ~ 11429339 (+) False G179758
TU213850 other downstream 472425 13096373 ~ 13098156 (+) False ankmy1
trnag-gcc_9 other downstream 626422 13250370 ~ 13250441 (+) True trnag-gcc_9
trnag-gcc_10 other downstream 632109 13256057 ~ 13256124 (+) True trnag-gcc_10
trnag-gcc_11 other downstream 634060 13258008 ~ 13258076 (+) True trnag-gcc_11
trnag-gcc_12 other downstream 639876 13263824 ~ 13263894 (+) True trnag-gcc_12

Expression Profile