RNA id: XM_034308478.1


Basic Information

Item Value
RNA id XM_034308478.1
length 1555
RNA type mRNA
GC content 0.45
exon number 9
gene id sirt3
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 5360418 ~ 5366235 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATTTTGAAATACTGAAGGAAATttgatgttgctgttgttattggCCTTTTCTTAGCATTATCTGGGCATTTATTTCGTGCATCACGGTAAAGCGTCGATATGCGTCATTGGAACAACCATAACACTGCTGTCGGATCAAAGTgacattattgtattatattaactAGTCATGACCTCGTTGCTGATTTTACCGAGACGTTGTATTATAAATATCAAAAGTAATGGAGGAATATTCACAGGCAAAGGTCTATCAGGGATACACACTACCCATAGGAAGATTTCAGCCAAGTTTGTCTGTGATCAGAAGCTGGACCTGGAGCGACATGGACACTCAGGTGTTTTGCGATGTTGGAGAAGCATCCAGAGAGGGTTTTTTGGAGGAGGCCATGGAGGCGCCAAACAGAATATGACTTTAGAGGACATTGCAAAAGGAATCAGAGAACGAGAGTACAAAAGGATAGTGGTTATGGCTGGAGCAGGGATTAGTACTCCAAGTGGAATTCCAGATTTCAGATCACCTGGAAGTGGCCTTTATGACAACCTCCAAAAGTACAACCTCCCCTATGCCGAGGCCATATTCGAGATTAACTATTTCCATTACAACCCTAAACCTTTCTTTGCCTTGGCTAAAGAGTTGTATCCTGGTAATTATCGTCCCAATCTGGCCCACTACTTCATCCGGCTGCTTCACGATAAAGGCCAGCTGCTCAGGATGTACACTCAAAACATCGATGGGCTGGAGAGAAtggCAGGAATCCCAGCTAAGAAGTTAGTGGAGGCACACGGGACATTCGCGACAGCCACATGCACAGTTTGTCGTCGAGAATACCAAGGTGAAGACCTGCGTAGCAATATAATGGAAGGAACAGTGCCTCACTGCTCTCAGTGTAAAGGAGTGATTAAGCCTGACATCGTGTTTTTTGGTGAAGAGCTGCCACAGCACTTTTTCCTCTACCTCACCGACTTCCCCATGGCAGACTTACTGATTGTAATGGGGACGTCATTAGAGGTGGAGCCATTTGCCAGCTTATCTGGAGCCGTGCGAAGTTCTGTGTCTCGCCTCCTTATAAATCGTGACCTGGTGGGACCCTTTGCCTGCGGCTCTTCACTGCACAGTGACGTGGTAGAGCTGGGTGATGTAGTGAGTGGCGTGAGGAAACTAGCAAACACTTTGGGCTGGATGCCTGAGCTGGAGACTCTCATGGCTGACGAAGGTCAGAAGGCTtcaaaggagagagaggaatgacTATCCGGATGTGGGAGACCAGCGTCATTTCTCGCATCCTCTCAGTCATTTTGTGGCTGTGATGTCTCGGCTCGACACATGTGGCACTTTAACAACCGGTGAAGTTGAACTGTAATGAACGCAGCACTTGGAGGCTCAGCTCACTGCATTAGTCTCCCTTTGTAGCTTTAATGGTTGTTTTACAACCTCAACGTTAATAGGGAATTGTTAATGGTATGAACTATGAGCTGATTAAATGTGATATTCTTTTCAGgtgatttaacatttttattcctacttattaatattaaaagctTTGAAAGGTGTCA

Function

GO: NA

KEGG:

id description
K11413 SIRT3, SIR2L3; NAD+-dependent protein deacetylase sirtuin 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208726 lncRNA downstream 247150 5110114 ~ 5113268 (-) True G176336
TU208332 lncRNA downstream 513277 4840748 ~ 4847141 (-) True G176029
TU208331 lncRNA downstream 519725 4839988 ~ 4840693 (-) True G176028
TU208311 lncRNA downstream 624002 4732382 ~ 4736416 (-) True G176015
TU208248 lncRNA downstream 727633 4630348 ~ 4632785 (-) True G175967
TU208989 lncRNA upstream 265591 5631826 ~ 5715020 (-) True G176556
TU209305 lncRNA upstream 716593 6082828 ~ 6167802 (-) True G176817
TU209304 lncRNA upstream 805963 6172198 ~ 6176354 (-) True G176816
TU209329 lncRNA upstream 818100 6184335 ~ 6188288 (-) True G176832
TU209358 lncRNA upstream 894562 6260797 ~ 6261240 (-) True G176855
XM_026930390.2 mRNA downstream 34960 5318352 ~ 5325458 (-) False cdhr5a
XM_026930389.2 mRNA downstream 34960 5318352 ~ 5325458 (-) True cdhr5a
XM_026930601.2 mRNA downstream 58067 5229326 ~ 5302351 (-) True LOC113536575
XM_026930602.2 mRNA downstream 58068 5229326 ~ 5302350 (-) False LOC113536575
XM_026930897.2 mRNA downstream 140179 5199143 ~ 5220239 (-) True chrna7a
XM_026930910.2 mRNA upstream 41361 5407596 ~ 5418681 (-) True LOC113536772
XM_034308710.1 mRNA upstream 41361 5407596 ~ 5415705 (-) False LOC113536772
XM_026930560.2 mRNA upstream 53761 5419996 ~ 5446722 (-) False nqo1
XM_034308721.1 mRNA upstream 53761 5419996 ~ 5446719 (-) False nqo1
XM_034308720.1 mRNA upstream 53761 5419996 ~ 5445156 (-) True nqo1
trnai-uau_2 other downstream 46164 5314162 ~ 5314254 (-) True trnai-uau_2
trnai-uau_1 other downstream 69824 5290502 ~ 5290594 (-) True trnai-uau_1
TU208736 other downstream 163600 5191964 ~ 5196818 (-) False trip4
TU208689 other downstream 169896 5139610 ~ 5190522 (-) False trip4
TU208693 other downstream 279523 5079817 ~ 5080895 (-) True G176307
TU209010 other upstream 330223 5696458 ~ 5708265 (-) True LOC113536561
TU209012 other upstream 330223 5696458 ~ 5708265 (-) False LOC113536561
TU210154 other upstream 2115214 7481449 ~ 7483958 (-) False si:dkey-56d12.4
XR_004579066.1 other upstream 2214199 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579065.1 other upstream 2214199 7580434 ~ 7588815 (-) False si:ch1073-365p7.2

Expression Profile