RNA id: XM_034308632.1


Basic Information

Item Value
RNA id XM_034308632.1
length 1907
RNA type mRNA
GC content 0.51
exon number 9
gene id gtpbp3
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19746882 ~ 19764051 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGGCGCACAGAGGCGGGATTGAATTTGATTGACGGCATTACCAACAAATCAGAGGCGTCTAGAGATTTACGTCATGGCGACGCAGACCAATGAAATTCACgaaaaactaatcaacagcaACCTCATTGGATTTTAAACAGGAAGATGGGCTTTCACGTGTGTGTTAgaggatttattattattattatttttgtagtcTCTGCTACATGTATTTAGAAATTTGAAATCTGAAAAGTGACACAATGTTAACTGCGAGTGGTGTAACTGGAGTAACATTGTTATATTGTAATCTTAAAGAAGTAGCATCCCTAGCACAGTAGCAGAAGCCTACCATGACGCCTGCCGGCTGCTGGAGGACTGCCCTCTTTAAATATGTCACAAGGCCACGAGTGTACCTCAGGTGTCCTGTCGTCTTTGGTCAGGCTTGCCCTGTTAGACCTCTGTGCAACAGTCCTGCCCCTGGCTTTGAGGACACGATCTTCGCGCTGTCTTCTGGGCGAGGTCGGTGTGGAGTAGCCGTGGTGCGAGTGAGCGGACCAGATGCAGCCGGAGCTCTGCGCGCTCTGACCGGCCTGAAGCGCGCACTGAGCCCCCGCACTGCGCTCCTCCGCAGCATCACACACCCCACATCTAACGAGCTGCTGGACCGGGGCCTTGTCCTGTGGTTCCCAGGCCCTCACAGTTTCACTGGAGAGGACAGTGCTGAGTTTCACATACATGGAGGACCTGCTGTTGTCAGTGGTGTTTTACAAGCCCTTGGGAGTCTGCCTGGACTGCGGCCTGCCGAGGCAGGTGAGTTTACCCGACGTGCGTTCCATGCTGGAAAGTTGGATTTGACAGAAGTAGAGGGGTTGGGGGATTTGATCCATGCAGAGACAGAAGCTCAGAGGAGACAAGCACTCCGGCAGATGGCAGGGGACCTCGGTCGCCTCTACAATGACTGGAGTCAGCAGCTTAAGCATTGTTTAGCACACGTGGAGGCTTTCATTGACTTCAGTGAGGGTGAGCTCATAGAGGATGGAGTCTTAAATCAAGTGGACACAGCAGTATCCAAGCTGCAAGTGGACATACAGAAGCATCTTTCTGATGAGCGGAGAGGCGAGCGGCTGCGCAGTGGTGTACAGGTTGTCATAGCAGGATCCACCAACGCGGGCAAGAGCAGCCTTTTCAATCTACTGTGCCAACGTCCTGCAGCTATTGTGTCTCCTATAGCAGGGACCACCAGAGACGTTGTGGAGACGCCACTGGACATCGGAGGTTTTCCGGTCCTGTTGAGTGACACGGCAGGTTTGAGGGAGACGAATGActgtgtggagagagagggCGTCCACCGTGCCCTGAAAAAGGTGGAAGTGGCGGATCTGACACTGGTGGTCATCGACTCGACACAGCTTCCTCAGGAGCCTCAGATGGTGCCAGGTTTCCTGAATGACTACCTCAGCAATGTGCTGCCAAAAGAGACGGAGCAGGATCACATGCAGCAATGTCTCCTGATCCTTAACAAAAGTGACCTCCTGTCTAATGAACACATTAGCATCATCCAGAGAGCCCTCAGTGATGCGTTCACTGTGGCTCCAGTCAGTATTCTGTCATGCAGTACCAGAGAAGGACTGGCTGATTTCTTGAAACTGTTGCAGGAGAGAGTTAAGACAATGTGTGCAGATCCGCTGGTCGGCAGCCCAAGTCTAACTCAGACCCGCCATCGGACTAACCTGCAAAAGAGCGTTGAGGCTTTGAGTCAATATCATAAGTACAGAGACGTGGACCTGGCGCTGGCAGCAGAGGGACTGCGCTTAGGCCTTAGCTGCTTGGGTAGAATCACTGGCAAGGTTGACACTGAAGAGATCTTGGATGTgatttttagagatttttgcATTGggaaataaatataacactgtTCACAGTC

Function

GO:

id name namespace
GO:0006400 tRNA modification biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K03650 mnmE, trmE, MSS1; tRNA modification GTPase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218615 lncRNA upstream 42633 19703635 ~ 19704250 (+) True G184718
TU218499 lncRNA upstream 82392 19661092 ~ 19664491 (+) True G184617
TU218491 lncRNA upstream 144244 19548663 ~ 19602639 (+) True G184614
TU218741 lncRNA downstream 44662 19808713 ~ 19809254 (+) True G184823
TU218759 lncRNA downstream 79996 19844047 ~ 19844800 (+) False LOC113534304
TU218810 lncRNA downstream 157420 19921471 ~ 19947483 (+) True G184882
TU218828 lncRNA downstream 190543 19954594 ~ 19955040 (+) True G184900
TU218933 lncRNA downstream 500885 20264936 ~ 20265620 (+) True G184988
XM_026930531.2 mRNA upstream 49177 19695227 ~ 19697706 (+) False rps15
XM_026916844.2 mRNA upstream 55103 19676216 ~ 19691780 (+) True dazap1
XM_026916854.2 mRNA upstream 55103 19676220 ~ 19691780 (+) False dazap1
XM_026916861.2 mRNA upstream 55103 19680825 ~ 19691780 (+) False dazap1
XM_026922030.2 mRNA upstream 87463 19652838 ~ 19659420 (+) True ndufs7
XM_034308741.1 mRNA downstream 17177 19781228 ~ 19796168 (+) False ushbp1
XM_026918792.2 mRNA downstream 19683 19783734 ~ 19796168 (+) True ushbp1
XM_026922981.2 mRNA downstream 35605 19799656 ~ 19808358 (+) False nr2f6b
XM_026922974.2 mRNA downstream 35607 19799658 ~ 19808358 (+) True nr2f6b
XM_026928996.2 mRNA downstream 63936 19827987 ~ 19834414 (+) True tax1bp3
TU218602 other upstream 46609 19695244 ~ 19700274 (+) True rps15
TU218488 other upstream 193361 19532081 ~ 19553522 (+) False si:ch73-40i7.5
TU218486 other upstream 193361 19550382 ~ 19553522 (+) False si:ch73-40i7.5
TU218227 other upstream 477661 19254957 ~ 19269222 (+) False adgrl4
TU217312 other upstream 1950264 17795445 ~ 17796619 (+) True G183549
XR_004579107.1 other downstream 63935 19827986 ~ 19834414 (+) False tax1bp3
XR_003403385.2 other downstream 101747 19865798 ~ 19871463 (+) True ccl44
TU218923 other downstream 385920 20149971 ~ 20150894 (+) True G184979
XR_004579103.1 other downstream 1425735 21189786 ~ 21210539 (+) False wipf2a
trnap-agg_1 other downstream 2194837 21958888 ~ 21958959 (+) True trnap-agg_1

Expression Profile