RNA id: XM_034308690.1


Basic Information

Item Value
RNA id XM_034308690.1
length 6126
RNA type mRNA
GC content 0.51
exon number 24
gene id sos1
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 5712448 ~ 5760722 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTGATCGATTGGTTTCGTCTGCGACCTCTTCACTCGCTCGCTCGCGTAGCACAGCGCTCGGGGTTTATCGCGCACAGAGGCGTTCTCCGAGTCCATCAAGAGGAAACCAGTGCGGAGcatttctcactttctttcctttgttgttgttgttgttgttgttgttgtttatttcgGGTTATTGATTGGTACGAGTTTTGGGCGACGCGCAAAAAAAGGGGCTCAGTCTTTTTGTTTTCGTGTAGCGAGTGAGTTTTTGGggaagactctctctctctctctctcttccactgcgcatgttctctctgtctcttttctacCAATACAGCTGCGCCCGAGTCACAACACTCAACCGAGAAtaaatactctttttttttttaaaaaaaaataatttttttaaatacctcaGTGTATCAGAACTGAAGCTGGGAAGCAGGACAGGAACACAGTCCCCAGGACTTCACTGTAGTCTCTCGCGTTCTGTTAAAATACTGTCTGGCTAATACACTAGTTAGCTACATTTCGGATAAAAATggacgaacacacacacacctggagagCTTTTTGTCTTAAACAACGAATTTAACACATTATACATCACAATAcgtgatataaatatatataagttgttttttttccatgtaacTGTAGCTAGCAGCTAGCCTTCGTATATAAATCGCTGTTTAAGCTCGCTTAGCCCAGctagtttattattagccagCTAGCACGAGCTCGTAGTGGAATTCGGATCGATTGGATAATGtcaacactgttttatttagttttttaaaactaCATGAGGACAAACTGGGAGAtatatttgacattttgaaGGCTTCCCAGGATTAAGACTGAGGACTTTGGGAATTTGGGGAGTGAGTGAAAGGCGGCCAACGTCATCAGGCGGCGTATAACGTTTACAGTTAGCATAACACTCGGGAgttagcatagcatagcatagcataatataacataacatagtGTAAGCGTAAGCATAAGCATAGCAGCCGCGCGCGCGAGCAGCGAGCCGGAGATGCCATGGTGGCTCTAGCTCGCCGCTTTGACCGTGTGGCGGAGCTCCTGCTTTCCGCTGGCTCgtcgtgtgtgaatgtgaagcTCGCCGGGCCTGTGGCCCCTGCTCCTGCGTGGATGAAGCAGTAGGGACCGGAGCTGTTCCCTGGCTCAGCTGAAACGCCATGCAGGCGGCCCAGTGCCAGTACGATTTCTTCAGCGAGGAGAACGCGCCCAAATGGAAGGGACTGCTGGTGCCGTCCCTCAACAAGgTGCTAAGTCAGGTACACCCCAAGCTGTCATCTCAGGAGGAGGCTCTGCAGTACATCGAGGAGCTGATTCTGCTGCTACTGAGCATGCTCTGTCAGGCCCAACCTCGCACCGTGCAGGATGTGGAGGAGCGAGTCCAGAAGAGTTTCCCTCACCCCATCGACAAGTGGGCCATTGCGGACGCCCAGGCGGCCATTGAGAAGCGGAAGAGGAGGAACCCTCTCGCTCTGCCTGTGGATAAGATTCACCCACTTCTGAAGGAGGTACTAGGCTACAAAATAGACCACCAGGTGTCTGTGTACATCGTGGCGGTGTTGGAATACATCTCAGCGGACATCCTGAAGCTGGCTGGAAACTACGTACGAAATATACGGCACTATGAGATCTCTCAGCAAGACATCAGTGTGGCCATGTGCGCCGataagGTGTTGATGGACATGTTCCATCAGGACGAGGAGGACATCAGCGGCTTCCCCCTCATGGACGAGGAGCCGTCAGCGTCTGAGGCGCAGACCTACTACGACCTGGTGAAAGCGTTCATGGCTGAGGTGCGTCAGTACCTGAGGGACCTGAACCTCATCATCAAGGTGTTCCGCGAGCCATTCGCCACCAACATCATGCTCTTCTCACACCACGATGTGGAGAACATCTTCAGTCGTATAGTGGACATCCATGAGGTGACGCTGAAGCTGCTGGGGCTCATCGAGGACACGGTGGAGATGACCGACGAGGGAAGCCCTCACCCGCTGGTGGGCCGCTGCTTCGAGGACTTGGCTGAGGAGCTGGCCTTTGACCCCTACGAGACGTACGCTCAGGACATCCTGCGGCCCGGATTCCATGACCACTTCCTCAGCCAGCTCTCCAAACCTGGAGCAGCCTTCTACCTCCAGTCGATCTGTGAAGGCTTCAAAGAGGCCGTGCAGTACGTATTACCTAGGCTGCTCCTGACCCCAGTTTACCACTGCCTCCACCACTTCGAGATCTTAAAGCAACTGGAGGAGAAAAGTGAGGATGAGGACGATAAGGAACGTCTGAAGCAGGCCATCACTGCGCTCCTCAACCTTCAGAGCAGCATGGAGAGGATCTGCTCCAAAAGCCTGGCCAAGAGAAGACTAAGCGAGTCGGCCTGCCGCTTCTACAGTCAGCAGATGAAGGGCAAGCACCTGGCCATCAAGAAGATGAACGAGATCCAGAGGAACATCGATGGCTGGGAGGGCAAAGACATCGGCCAGTGCTGCAACGAGTTTATAATGGAGGGCACATTGACGCGGGTGGGCGCCAAGCACGAGCGCCACATCTTTCTCTTCGATGGTCTGATGATCTGCTGCAAGTCCAACCATGGACAACCACGCCTACCAGGAGCCAGTGCTGCCGAATACAGGTTGAAAGAAAAGTTCTTCATGCGCAAGGTCCAAATCAACGACAAGGACGACAAGGAGGGTGAGTACCGGCACGCCTTTGAGCTCATCCTGAAAGATGGCAACAGCGTAGTGTTTGCTGCCAAGTCTGCTGAGGAGAAGAATGGTTGGATGGCAGCGCTGATTTCGCTTCAGTACCGCTCTACTCTGGAGCGCATGCTGGACTCGGCCATGCTccaggaggagaaagaggagcaGATGAGGCTTCCCAGTGCCGAGATCTACCGCTTTGCAGAGCCTGACTCCGAGGAGAACGTGGTGTTCGAAGAGAACGTGCAGTCCCAGTCTGGCATCCCAATAATCAAGGCAGGCACGGTGCTGAAGCTGATCGAGAGGCTCACCTTCCACATGTATGCAGatcCCAATTTTGTGCGGACCTTCCTCACCACCTACAGGTCGTTCTGTAAACCACAGGAGCTCTTGGACCTGCTCATTGAAAGGTTTGACATTCCAGAGCCCAAACCCACAGAGGCGGATCAGATGGCCATGGAGAACGGAGATCAGCCGCTCAGTGCTGAGCTCAAACGCTTCCGCAAAGAATATGTCCAGCCAGTGCAACTCAGGGTGCTGAATGTGTGCCGGCACTGGGTGGAGCACCACTTCTACGACTTTGAAAGGGACGCTCAGCTACTCTGCCAACTGGAGGAGTTCATCGGAACAGTCCGagGCAAGGCCATGAGGAAGTGGGTTGAGTCCATCACCAAGATCATCCAGAGGAAGAAGCAGGCACAGGCTAACGGCCCGAGCCACAACATCACCTTTGAGAGTTTACCTCCACCTATCGAGTGGCACATCAGCAAACCGGGCCAGATCGAGCAGTTTGACCTGATGACCCTTCACCCCATCGAGATTGCTCGCCAGCTCACACTGCTCGAGTCTGATTtctacagaGCGGTTCAGCCGTCAGAGCTGGTGGGCAGCGTGTGGACGAAAGAAGACAAAGAACTGAACTCACCCAACCTTCTGCGTATGATCCGCCATACCACCAATCTCACCCTCTGGTTCGAGAAGTGTATTGTGGAaacagagaacctggaggagcGTGTAGCTGTGGTGTCCCGCATCATCGAGATCCTGCAGGTCTTTCAGGAGCTCAATAACTTTAACGGCGTCCTCGAGGTGGTCAGCGCCATGAACTCTTCTCCTGTATATCGGCTTGACCACACCTTCGAGCAAATCCCGAGCCGACAGAGGAAGATTCTAGAAGAGGCGCATGAACTCAGTGAGGACCATTATAAGAAGTATTTGGCCAAACTCAGGTCCATTAACCCACCGTGTGTGCCCTTCTTTGgtatatatttaacaaatatcCTGAAAACGGAGGAAGGCAACCCTGACTTCCTTAAGAGACACGGTAAAGAGCTGATTAACTTCAGTAAGCGGCGgaaagtagcagagatcacCGGAGAGATCCAGCAGTACCAGAACCAGCCGTACTGCCTACGGGTGGAGAGCGACATACGGAAATTCTTCGAGAACCTGAACCCAATGGAGGACATGACAGAGAAGGAGTTTACAGACCATCTTTTTAACAAATCTTTAGAGATCGAGCCTCGCAACGCACGTTCCCTGCCTCGATTCCCTAAGAAGTACAGCTGCCCGCTGAAATCTCCGGGCGTACGACCGTCCTCAAGTCGACCCGGCACCATGCGCCACCCGACGCCGCTGCAGAATGAGCCGAGAAAGATCAGCTACAGTCGTATTCCGGACAGCGAGACAGAGAGCTGCGCAGCATCGGCGCCCAACTCGCCCCGAACACCCCTCACACCCCCACCCGCCTCCGCAGCCTCCAGCTCCACGGACATCTGCAGCGTGTTCGACTCTCCACAGGGTCCCTCCAGCCCCTTCCACTCGAACAGCGACACCATTTTTGCCCCGGTTGCGCTGCCTCATGGCCCACggTCATCGTCCGTGTCCTCCATGGTGAGTTTCCACAGGAGTACAGACGACCCCCCTATCCCTCCTCCTGTCCCACCACGACGGCGTCCTGAATCTGCTCCTGCTGAGTCCTCGCCCTCCAAGatGATGTCAAAACACGTGGACAGTCCCCCAGCCATCCCCCCGAGGCAGCCCACTGGTAAGCTGTATCCAATGCGCTACTCCGTGTCGGATGCTCCCTCCAGCCCGCCCTCCCTGCCTCCCCGCGAACCCTTGCGCACTCCGGATGTGTTCTCCAGCTCACCTCTGCTCCTCCAGCCTCCTCCCCAGGGCCGCCGGGCCGAGCCCAGCCACTTTTTTCCCTCGTCCCCGTCGCCGCTGGGACCCCGGAAACTCCCGGCCTCGGCTCCGGCGCTGCATCTGCTCGAGTGTGATGCTCCACACGGCGCTGCCGGACCCCCTCTGCCCCCTCGCCACAGCACGGCTATCCCTAAACTGCCCCCAAAAACGTATAAAAGGGAGCGGGAAGGTCCGCCGCTTCTCGAGAACGCCAACCCTTCCTAAAGAGGAAACACTAAAGACTGCAGATGAGaagtgtgatatatatatacagaataatgactttttcaaaaaaacaaaaaaaacaaaaacaagaagaagactGTTGGATGAAATGCCAGTTTTGAActttggaggagaaaaaaaaaaaaaaaaagacaaacatgaaatgaaaaatgtgccCTTAAACCGTTCAGATTGTGTTTTCATGATGTGAAAACTTTGTTTGAGATTAGCCAGCCCTCCTGCAGGTTGTCTCTCTGTATATTTTTTGGggttgatttctttttttgttttgtctttttgaaagctgtttgtgtttttgtccttgtctgatgtttgttcatttcattttgctgttctttttttttttgtatgttgctTATTTTCAGCCGTGAGCTCATCGGcctttcctcctttcctcccCCTGCACAGCTGCAGTCAGgaccacatttaaaaaaaaaaaaaaaaaaaaacatacgcAAATCATTAACTTTAATGCTGGACCGCAAAAGACTATAGAGCAGTTTGAACCAGCTCCTAAATAAAGCAAATCAACAAAGCACGGTTTCTCTTCACAGACTATATGTGCCTGCTTCCTCGATGCCGAGGACTGTTTCGGCCAGCGTGATGCTAGACGACAGGTAGGACTCGACCAATAGGACTCCTTCTGCCTCAGCCTTTGGCTTAACCACACCTCATTAcgtttaaagaaaaaagggacTGGGAGATGTGAGCTGCGTTTGTGTTTAACCCCCACGGGGAGAGGTCTGTGTGCCAGTAGTCTCAAGAGTACCACCAGTTAAAGGTACCCTCCCACAACCAAAGAGGTACTTTCATGCATtcaagaaacatgaaaaaaagagaagtgatTGTCCTTTATGTGTTAGaacttttattttctgaatcatttctgtttttgcCAATAAGtatgtaaagaagaaaaaaaatgattgccTTCTTAAAAACAAGGGAATAAAAGTGTTTCTACCA

Function

GO: NA

KEGG:

id description
K03099 SOS; son of sevenless

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208744 lncRNA downstream 305349 5304614 ~ 5407099 (-) True G176354
TU208726 lncRNA downstream 599180 5110114 ~ 5113268 (-) True G176336
TU208332 lncRNA downstream 865307 4840748 ~ 4847141 (-) True G176029
TU208331 lncRNA downstream 871755 4839988 ~ 4840693 (-) True G176028
TU208311 lncRNA downstream 976032 4732382 ~ 4736416 (-) True G176015
TU209305 lncRNA upstream 322106 6082828 ~ 6167802 (-) True G176817
TU209304 lncRNA upstream 411476 6172198 ~ 6176354 (-) True G176816
TU209329 lncRNA upstream 423613 6184335 ~ 6188288 (-) True G176832
TU209358 lncRNA upstream 500075 6260797 ~ 6261240 (-) True G176855
TU209451 lncRNA upstream 596852 6357574 ~ 6358087 (-) True G176938
XM_026930577.2 mRNA downstream 4144 5696380 ~ 5708304 (-) False LOC113536561
XM_026930542.2 mRNA downstream 47767 5591074 ~ 5664681 (-) True LOC113536546
XM_034308844.1 mRNA downstream 139686 5566660 ~ 5572762 (-) False ist1
XM_026930273.2 mRNA upstream 12835 5773557 ~ 5781153 (-) True LOC113536391
XM_026930735.2 mRNA upstream 20503 5781225 ~ 5786544 (-) True plaat1
XM_026930587.2 mRNA upstream 70029 5830751 ~ 5843843 (-) True srsf11
XM_026930588.2 mRNA upstream 70029 5830751 ~ 5838279 (-) False srsf11
XM_026930734.2 mRNA upstream 93655 5854377 ~ 5858326 (-) True rbbp9
TU209010 other downstream 4183 5696458 ~ 5708265 (-) True LOC113536561
TU209012 other downstream 4183 5696458 ~ 5708265 (-) False LOC113536561
trnai-uau_2 other downstream 398194 5314162 ~ 5314254 (-) True trnai-uau_2
trnai-uau_1 other downstream 421854 5290502 ~ 5290594 (-) True trnai-uau_1
TU208736 other downstream 515630 5191964 ~ 5196818 (-) False trip4
TU210154 other upstream 1720727 7481449 ~ 7483958 (-) False si:dkey-56d12.4
XR_004579066.1 other upstream 1819712 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579065.1 other upstream 1819712 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579064.1 other upstream 1819712 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579063.1 other upstream 1819712 7580434 ~ 7588815 (-) True si:ch1073-365p7.2

Expression Profile