RNA id: XM_034308692.1


Basic Information

Item Value
RNA id XM_034308692.1
length 3399
RNA type mRNA
GC content 0.45
exon number 12
gene id slc38a7
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 26083657 ~ 26095138 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAGAACTACAACATCCGTCGTGCGTAGCTGCAGGTCATATGATCCTGCACGTGACGCTGGTGCTGGGCTCAGCCGCAAACTCATGGCTGGTGTGTGGAGGAGCAGAAGGTGGGAGAGCTTTCTACAGACTCATGATACAGGACTTGGTTCCAATCCAGCACAGGAGATTGGTTTTTCACCCagggccgtgtgtgtgtgtgcgtttttgtgagtgtgtgtgtgtgtgtgtgtgctgtccgTCTGAAGGAAGACCTGCATGGCATTGTTTTGCCCCTGTGTTAATACAGCTCCAGAAACACCACTGCCTGCTAACCATTTCCTGTGACGTCTGGAGCCGTGACccctgaccctgtgtgtgtgtcactttgGTGTAAAAAAACTGTGTGAGACATGGCCGTGAACTCCGAGCCGAGTGATTGGGGATACGCTGGAAATGACGAAGAGAAAGAGCCGCTACTTGTGGCACCGCATGCTCAGTCGAAGCAGACTCAGGGCAAGACTTCGCCGTATGGCGCGGTGTTTATTGTGGTAAACGCCGccctgggggcggggcttctcAATTTTCCTGCTGCGTTCTACATGGCTGGAGGAGTTGTAGCTGGAGTAGTGCTGCAGatgtgtttactgATCTTCATCATCACCGGCTTGGTGATCCTTGCGTATTGTTCTCAGGTGAGCAACGAGAGCACGTATCAGGAAGTGGTCCGTGCCGTGTGTGGGAAAATTCTGGGTATCGTGTGCGAGATCGCCATTGCTGTCTACACCTTCGGCACGTGCATAGCCTTTCTGATCATCATCGGAGATCAGCTGGACAAGCTGATCAACGCGATGACTCATGAGTCGGATGGTGCTGTCAGCTCTCACTGGTATACAGACCGCAAATTCACCATCACAGTCACCTCTGTGCTCATCATCCTCCCTCTGTCCATCCCCAAAGAGATCGGCTTCCAGAAATATGCCagCACATTCAGCGTCATCGGTACCTGGTATGTGACCGCCATAATCGTCATCAAATACGTCTGGCCAGACCCAGAAATGTCACCTGGAATCATTCCTACCAGtccTGCATCCTGGACTGCCGTGTTCAACGCCATGCCGACTATCTGCTTCGGATTCcagtgTCATGTGAGCAGCGTTCCAGTGTTTAACAGTATGAGGAGTGCGACGCTTCGGCCATGGGGGGGCGTGGTGACACTCAGCATGATCATCTGCCTGTTCGTCTACAcaggaacagGTGTGTGCGGTTTCCTGTCGTTCGGTTCCACGGTGAGTCAGGACGTGCTGATGTCATATCCTTCCACAGATATCGCCGTGGCCATTGCCAGagccttcatcatcatcagtgtggTCACTTCATATCCCATACTGCACTTCTGCGGAAGagccGTGTTAGAAGGTCTGTGGCTGCGTTTTAACGGGACAGACGTGGACACAGACGTGGTGAGAGAGCGAAGACGGCGTGTCCTGTACACACTTGTCTGGTTCTGTCTCACACTAATCCTCGCTCTCACTATCCCCGATATTGGGCGTGTCATCTCGCTCATCGGCGGCCTCGCAGcctccttcatcttcatcttcccAGGTTTGTGTTTGATTGAGGCCAAGATCTCAGAGCATGATGCCAGATCAGCCAGCTGGCATGCGCTGGTGCTTTACGGAATCCTCATGGTCACAGTTGGCACGTTCATCTTCGGCCAGACGACCACCAATGCCATCTACAGAGACATCCTCAACCACTGAGACGGCTCGGACAGCTGTGCTTGACTTGCACGTAATGAAAGAGTTGCCGAACGGCAACGCCACTTCCACACAGCGACCTCGGCTTTAAATCTGCAAAAACGTTGCACAAAGGAACAAACGATTAGATCTCGTAATAAGCTTATTAGGCTGTTCAGCATGCGGCATGAAGCCTCCTACTATAGACTCCATTAACACACTACACAAGCATGCTGGTTTATTAGTTCAACTTTAAAGCAGACGTCCGATCAAAATCGATtcgttttttaaatttcctttaTTAACCTTTAACCTCTTTATTGCATTCTTATATTATTTGTCAGTATTTGTGGGAAGTTgctaaaaaatgaaatttagcCAAACTGTAAAACGTTTTTAGCATCTCAAGCTGGCTATAAGGCTAATATAGCTAACGagtaatggggaaaaaataaggcCGCTACTTCGCATacctaaatcatcacacactctgctcaaaccATTGTTATCTATAGAAACGGAGCGAAGGACGTCACCGAGCCAAACGCTCTAGTAGCCGAATCACTGCGTTGATTTTGTCGCGCTTGTTAGCatcattagcctcatagctccaacACAAAAAGACTGAACTAATAGGCAGTTATTGTGATATTGGCAAACATCTCCTCAATTCTGTATgcttcaatgtttttttttttctgaattgtcactttaatataataatataataatttttataataatccTTTTATCAGTTGAACCATTTTATTAGAGattaatgcaaaaatgatttttttttaaaaaattctaaccAGAATAATTCaatttattcctttattccttCTGATACTGTTCCTTTTTGTGATTTACGTGACCAATACACGACTGCACCGATCAGCTTTggaagaatataataaaatgaaacggtgtgaaggaaaaaaaacaattagtgAAGTTTagagaagctgtgtgtgttttttttttttttttctttttcttttttctctctctccattaaCACTATGTTATTGATGGTGTGGTGAGGGCGATGTTCTCTCAGGTGTCTTCCTGTAGCACATAGTGGTTATTTTAGTCATTAAATGTTGGGTAACTGTTCATAATCGGTAAATAGCTCCATGAAATTCGGTATTTAAAtacagctagctggctagcgttACACACACAGGGTTGTGTTATCAATGATACGATGATAATGGGACGGAGAAATAATGCACAGCCTCTCTGAACTAAGACatatttggctgttttttttttttttaatagatttgtCATGCCTGCACGCATCAGAATTATGTCGGTCATTCACAGTTTCAATATTTAGTACTGTTTTAGCACGTCGGAGGTTTacacttttgtattttgtacgCATGTGCTGAGTGGTTATATGGTATATCACACTAATCAACCCAGTTTCCCCCAAAGTAGCTGATTGTTGTCTCCTTATTTTGGACATATCTGAAACGTCAACGGTGTCGTTTTTGGAGAAGACAATCCACGCAGAAAGAACtggtgtaacttttttttttcacataaaatgATGCAATACAATGTGAGTGGAGGAAAAAGGTGCAGGTTGTAATTTTCGTATTTTCAGCATGTCTCatcatgaacatttttttaaatatttgtttgaaCTCAATAAAGGGATTTAAGTGTTTGAT

Function

GO:

id name namespace
GO:0006814 sodium ion transport biological_process
GO:0006865 amino acid transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K14994 SLC38A7_8; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 7/8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222672 lncRNA upstream 90254 25988798 ~ 25993403 (+) True G188127
TU222482 lncRNA upstream 133685 25941892 ~ 25949972 (+) True G187970
TU222471 lncRNA upstream 164052 25918551 ~ 25919605 (+) True G187961
TU222386 lncRNA upstream 333025 25747110 ~ 25750632 (+) True G187895
TU222258 lncRNA upstream 738166 25345291 ~ 25345491 (+) True G187782
TU222720 lncRNA downstream 14485 26109623 ~ 26109848 (+) True G188168
TU222731 lncRNA downstream 58391 26153529 ~ 26166792 (+) True G188179
TU222738 lncRNA downstream 66176 26161314 ~ 26164756 (+) True G188184
TU222739 lncRNA downstream 67170 26162308 ~ 26164756 (+) False G188184
TU222764 lncRNA downstream 123793 26218931 ~ 26222921 (+) True G188202
XM_034308780.1 mRNA upstream 21001 26039386 ~ 26062656 (+) True LOC113523928
XM_026909993.2 mRNA upstream 153068 25924180 ~ 25930589 (+) True tollip
XM_034308508.1 mRNA upstream 386785 25531754 ~ 25696872 (+) True LOC113523924
XM_034308509.1 mRNA upstream 386785 25531754 ~ 25696872 (+) False LOC113523924
XM_026910028.2 mRNA upstream 598847 25455708 ~ 25484810 (+) True slc6a5
XM_034308615.1 mRNA downstream 4386 26099524 ~ 26138619 (+) False helz2a
XM_026910023.2 mRNA downstream 24270 26119408 ~ 26138619 (+) True helz2a
XM_026910854.2 mRNA downstream 115410 26210548 ~ 26212115 (+) True polr2l
XM_026910859.2 mRNA downstream 128679 26223817 ~ 26227916 (+) True LOC113524556
XM_034308614.1 mRNA downstream 145934 26241072 ~ 26244720 (+) True LOC117598406
TU222375 other upstream 490154 25531745 ~ 25593503 (+) False LOC113523924
trnar-acg_9 other upstream 577162 25506423 ~ 25506495 (+) True trnar-acg_9
TU221326 other upstream 1872932 24207893 ~ 24210725 (+) True glrx2
TU221328 other upstream 1872932 24207893 ~ 24210725 (+) False glrx2
trnaq-uug_6 other upstream 2136594 23946992 ~ 23947063 (+) True trnaq-uug_6
TU222713 other downstream 90724 26185862 ~ 26212109 (+) False polr2l
TU222716 other downstream 111804 26206942 ~ 26210010 (+) True G188164
TU222712 other downstream 115421 26210559 ~ 26212109 (+) False polr2l
TU222884 other downstream 165539 26260677 ~ 26318575 (+) False syt7b

Expression Profile