RNA id: XM_034308723.1


Basic Information

Item Value
RNA id XM_034308723.1
length 4544
RNA type mRNA
GC content 0.48
exon number 21
gene id ttll7
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 18912318 ~ 18970547 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGACTGACTGATTCATGGACATTAGCATGCTAAtagcagtaaataaataaggattTAAGCACGCATGTATATGTGTAACGATATAGACAGAGGTGTTGAGCACTAACGGCCCACCcgagtctctctttctctctctttctctcacacacacacacacacacacacacacacactgcattatggGAATAGAGTAAAAAGCCCTAGCCTCCACACAGGCAACTtgtccattcatctatccatccacatAAATGCGCCGTGGTTACATTTTTTGGGAGAAGAAGCCCCCCTTCCCTTCCTcctccccctttccctctcctccCTATTACTCAGAAAGAGAGACCCAGATCCAGGAGGGAAGGTGAAGGCCGATGAGCGAGCAGTCTGCTGCTCACAACACCATACAGTCAGGAGAGACAAAGTAGATCTGTGGAAGGTTGCACCAGGTTGTGCTGGCGAGTCCCAGAGGCCTGGCGGAGGAAACCTCTGATCCACCCATCCCTGACATGCCATCACTCCCCACCGATGGAGATGATCAAAGGTCGTCCCCCGTGAACTTGCCATCTgcactgtccaatcagaatgGTGTCAAGAGAAAAGTTCGCactaagaagaagaagggagTCATCACTGCCAATGTGGCAGGAACCAAATATGAGATTGttCGTATTGTCATCGGGGAGTTGGCCTTCCACAAAACCAGAGATGAGGATGAAACAGCCAACCTCATCTGGAACGACTCGGCCGTACAGCATGAGAAAATCGCCGAGCTCAGGAACTACCAGaGAATTAACCACTTCCCCGGAATGGGCGAGATCTGTCGAAAAGACTGTCTGGCAAGAAACATGTCCAAGATGATTAAAAGCCAGCCTCAGGAATACAGCTTCATTCCCAAAACCTGGATTTTCCCGGCAGAGTATACTCAGTTCCAGAACTACGTGAAGGAGCTTAGACGCAAACGGAAGCAAAAGACATTCATCGTCAAGCCCGCAAATGGAGCAATGGGTCATGGTATATCTTTGATTCGGAATTGTGAAAAACTCCCAGCACAAGACCACTTCATTGTCCAGGAGTACTTGGACAAGCCCTTTTTAATGGAGGGCTACAAGTTTGATCTGCGCATTTACATCCTGGTCACTTCCTGTGACCCTCTAAGGATCTTCCTCTACAATGACGGCTTGGTGCGGATGGGAACGGAGAAGTATCATGCGCCTAATGAGTCCAATCTGaGTCAGCTATACATGCACCTGACGAATTACTCagtaaacaaacacaatgaGAATTTTGAGCGTGATGAGACCGTGGATAAAGGCAGCAAGAGATCCATTGGCTGGTTCACTGAATTTCTCCGCAGCAACAACTACGATGTCACCAAATTCTGGGGCGACGTTTCCGAGTTGGTGGTGAAGACACTGATTGTGGCCGAGCCTCATGTGCTCCATGCATACCGTATGTGCCGCCCTGGACAGCCACCAGGGAGCGACAGCGTCTGCTTCGAGGTCCTCGGCTTTGATATCATCCTTGACCGCAAGCTCAAGCCGTGGCTGCTGGAGATCAATCGAGCTCCGAGTTTTGGAACAGATCAGAAGATTGATTATGATGTGAAGCGGGGCGTCTTGCTCAACGCCCTGAAACTGCTGAACATCAGagcGAGTGATAAGCGACGAAACCTGGCTCAGCAGAAGGCCGAGGCGCAGCGACGCCTCTACGGCCAGGGCACCATGAAGAAACTTTCAGCAGGTTCATCTGAGTGGGAAAAGCAGCGCCTCACGCTGGAGCGGAGGAAAGAAGAGCTGaaagagAGGCTGGCCCAGGTTCGCAAGCAGATCTCCAGGGAGGAGTACGAAAAGCGTCATCTGGGGAACTACAGACGTATTTACCCCCCAGATGACAAGCTGCTCTTGGAGAAGTATGAGGGCCTCCTCTCGGTTGCCTTTCAGACGTTCCTCGCTGGGCGAGCAGCCTCACTTCAAAAGGAAATGAATAATCCTCTGAAACGAATGAAGGAAGAGGACATCTTGGATCTGCTGGAGCAGTGTGAGTTGGATGATGAGAAGTTGATGGGAAAGACATCCAGGCAGAGAGGAGTGAAGGCCTTGTCCTCCATGCCCGAGAGCGCCCAGATGCCCAGGAGGCACAGGGACTATGAAGACAGCTCAGGCAGCTGCAACAGTAGCAGAACGTCAGGCTCAAACactgatgaagaggaggagagcaCCAATGACCTCCAGGAGAAGAAGGTCTCCATTGAGGTTGGGGAGAGCAGACAGAAAGCCTCTGAGCGTTCCAGCCGTGTGCACTGGAAGCCTTCTCCCAAACCAGAGAAATTGGGCTCAGTATCCTCACCAGCGTTGTCAGGACTCATCCGCCGCTCTGTCTCATGCCCGCGCTCCATCTCTTCTTTGAGTGGACAGTCACCCAGCAGTGACACTAGAGGCACCTCGAACAAAAGTTTGCTACAGATGGGAAGCACTGGTGTGGCATCAGCCCATGCAGGAGCTTTGGCTCCACCAGCATCATTGGTTCGACCCCACACAGCTCTGCGCTCACACTCTCTCAGCCGTAACAGCTCTGCCCACAGAATGCCCCACAGCAGCAGCCTGGGCACTATCCACTCCACCACGGGAGAGTCCCTGCTGAACGCAAGGAGCAAGGAGCAGGAGGCGGAGCTGACGAGGCAGACGCTGGCCGCGCTGGGGGAGTTGCGCATCCGATTCCCAGGGAAGAGTGAGGAGGAAGCGGAGGCCGTGCTGGACGAGATTTTAAACAACTGGAAATATCATAAACCAAAAGTGGCTTCTTATTGGCTTGTGAAGTTAGATGCCACCAAACAAAGAAAGGTCCTGGACATTGTCCGCACCAACGTTCGTTCATTGCTGCAGAGGATCTGGAGGGAGCCCGACATCGACACTTTACGTCTCTACCGCCTTTTTAACCGTGTCTTCAGTCGACTGCTCTGGAGCCATGGTCAAGGCCTGTGGAACTGTTTCTGCAGCTCTGGCAGGTCATCGTGGGAGAGCATCTTCAGCAAAAGCAGCGAGGTGGTGACGCCGCAAGAGTTGCAGTGCTGCCAGCGCTTGGTGCAGCTGTGTCGTGACTGCCTGCTCGTGGTTTACAAGTTCGTAGTGGAGTCACGTGGGTCGCTGACCGGCCTGAGCCCGGAGTGGGATGACCCCAGgtatctGGTGCCAGTGACCTCCCAGTTCATCATCAAGTGGCCTTCCTCCAGCTCGAGCCGGAATGTGGCCTCTCGCAGTCTTTTCACCACCCGCATGGGCCACTTCTAATCCACCCTGGACACTCGCCGCCTCCTGGGGAGGAAAAGGGCACAGATCCCTCTGCTAACCCCCCCTTGGGGACACTAACTCTGGAAGCATGTGAAAAGGGATTTTGCCAGTCCGCTTTTTTAGATGTAGTCGTTGGCGCATCAGAGGCAGACAATTAGGCAGTCCCTCCCTTGAGTTCGGCTTGTGCCCGTGCTGTACAGTTATCTCctttattatactgtaaaatatgatTCACCATTATGGATTTATGTCCAGGACTTGCAAAACAATTCTGTCAATAACAGTGAATGTTTCAGTGAAATTTAGATGGAATGGGATTTGTGTGTATGCTCGTTGTGAAGAAAGATAACATacaatgctgtttttctttttcgctGCTTGCAATGTTTGCCAATGGCTGGTGCTGTTTttcttaaatgattttattacattttgctAGAGTATGTAGTAGTAAGAAGAATTTAGGTGTAAAGAACGGTTCTGTCAAACTGCTTTTTCTCAAGAGCCAGAATGAAGGAAGGTCTTCTGATAGCATGCCTCTCAGAAGAGAGTAAAATTCTGCAGTGCTGCAGCCAATATAGTTTACTTGTGTATGCCTACACATATTCCTTGTGTGTTTTCAGCTGACGAAGGGTAAATCACTGCACATCAGAAAtacttgaatttatttatactatttattttattttaaatattttaatttacatgcACTACTAACTTAAggttttaaaacatattttcattttgtctaAATTTTATGTATGTTAGGTTTTTTTGTGATATACTAAAGGTACGAGAATGAGTTTTAAAGTACTGTAGATTTTTGCTAAActgccatgtttgtgttttagcaGCTATGCCCTGTATTTTCTCAGCCTGTATGCAAGTGCCAGTGCAGATTGTGGCGTGCCAAGACTAAGCACAACCAGGAATGTGTTAATGGCTTCTAAATTGAGGTTAGTGAGTAATTAGAATGCTCCGTATGACAGTAAGTAGTGTTAGAATTTCAATTTGAAAAAGCTCCTGGTAGCTAATTTTCAGGTAGATTGTATCCTGTAAAAAATGCTAATGCAGGATGTTTTGGTTATGTCCTTCAGCAGTCCTTTTTAATGAATATGGCGATAACTTTATGCTAAGAAACCtatatgctatttttttctcctatccCTTAATGTTATTTCACTATGCCTGGatttcattcatgttcattctAGATAATGATTTTTAAGTTTAACAGCAATAAAAGACTGGTGGTTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217958 lncRNA upstream 17758 18891239 ~ 18894875 (+) True G184167
TU217565 lncRNA upstream 307711 18598718 ~ 18604922 (+) True G183796
TU217566 lncRNA upstream 315393 18593698 ~ 18597240 (+) True G183797
TU217567 lncRNA upstream 323917 18576732 ~ 18588716 (+) True G183798
TU217575 lncRNA upstream 342674 18568625 ~ 18569959 (+) True G183805
TU218141 lncRNA downstream 41860 19012407 ~ 19012612 (+) True G184309
TU218173 lncRNA downstream 110705 19081252 ~ 19081485 (+) True G184340
TU218370 lncRNA downstream 489271 19459818 ~ 19461690 (+) True G184504
TU218369 lncRNA downstream 491277 19461824 ~ 19462843 (+) True G184503
TU218362 lncRNA downstream 515825 19486372 ~ 19487778 (+) False smim7
XM_026918120.2 mRNA upstream 35557 18865130 ~ 18877076 (+) True uox
XM_026926658.2 mRNA upstream 60264 18848553 ~ 18852369 (+) True ctbs
XM_026915196.2 mRNA upstream 70089 18835173 ~ 18842544 (+) True LOC113527405
XM_034308959.1 mRNA upstream 118053 18786971 ~ 18794580 (+) True LOC113531757
XM_034308934.1 mRNA upstream 128755 18764099 ~ 18783878 (+) True pik3ca
XM_026933503.2 mRNA downstream 284384 19254931 ~ 19270261 (+) True adgrl4
XM_034308787.1 mRNA downstream 301405 19271952 ~ 19287643 (+) True vtg3
XM_034308908.1 mRNA downstream 318720 19289267 ~ 19297548 (+) True LOC113533188
XM_026928468.2 mRNA downstream 330074 19300621 ~ 19309461 (+) True mpv17l2
XM_026910829.2 mRNA downstream 348740 19319287 ~ 19322971 (+) False LOC113524462
TU217312 other upstream 1116014 17795445 ~ 17796619 (+) True G183549
TU217273 other upstream 1130820 17773713 ~ 17781813 (+) False ect2
XR_004579060.1 other upstream 1161131 17672171 ~ 17751502 (+) True mcf2l2
XR_003403373.2 other upstream 1163342 17672171 ~ 17749291 (+) False mcf2l2
XR_004579126.1 other upstream 1276238 17598464 ~ 17636395 (+) True anos1b
TU218227 other downstream 284410 19254957 ~ 19269222 (+) False adgrl4
TU218488 other downstream 561534 19532081 ~ 19553522 (+) False si:ch73-40i7.5
TU218486 other downstream 579835 19550382 ~ 19553522 (+) False si:ch73-40i7.5
TU218602 other downstream 724697 19695244 ~ 19700274 (+) True rps15
XR_004579107.1 other downstream 857439 19827986 ~ 19834414 (+) False tax1bp3

Expression Profile