RNA id: XM_034308740.1


Basic Information

Item Value
RNA id XM_034308740.1
length 5194
RNA type mRNA
GC content 0.49
exon number 22
gene id nid1a
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7515247 ~ 7547820 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAAGCTGAGCGCGCGGGTcggtgtgggtgtatgtgtacatgcgtgagtgtgtgtgtagagttgtAGCGATGGCGTCCTGTGCGCGCGCGGTGTGGCTCGGGCTGAAGCTGCTGTTTATCGCGGGCTCGGTGTCGGTAAACTGCGCGAGCCGAAGCGACCTGTTCGACTACGGAGCTCAGTTTGGAGATCAGACTCTGCAGTCCGGAAATGACGAGACTCAGCAAGTCCACTTAGACCGAGCTGTGCTCTTCTTCCAGGACAGCTTTGAAAAAGTTTACGTCAACACCAATGGCTTTGTCTCCGTGGCTAACCCTCCAGCTCAGTCAGAGTATTTGGGTAAGATGCCCGCTACGTTTGGCATTATCGCAGCTTTCCTTGGGGACCTGGACACCAGCGACGGAGTTGGAAAAGTCTACTTTAGGCAGGACACCAGCCCAGAATTGTTGCAGAGGATTGGCGAGCAGATCAGCCAGGCTTATCCGGACGAGAGCAAGCTTGAGCCGACTCATGCCTTCGTTGTGACCTGGGAGAACGTGGCAGCTCAGGGAGCTCTGGAAAGAGGAGACGGATCTCATAAAAAAAGAAACACTTTCCAGCTTGTCTTAGCATCTACAGAATTGACCACCTATGCCATCCTGCTCTACCCAAAAGATGAAATGCATTACTTCTCCGCTCCTGTAGGGGATGAGAGTCGGGCCATTGAGGCTGGATTCAGCCAGGGTCAGATTCAGGGCTGGGTCTGGACTACACAAGGCCCTTATTATCGCATCCCCACTAATGTCCAGAACACTAACACCAGAGAACTCACAGAACTAACAAATTCTGGCACACGTGGTGTGTGGGTTTACAAGATTGGCTCCTCCACCTTTTTCACTGATATTATACCTGGCCATGTCACCACCGTAGTGGAGAATGTGTTTCCTCAGGAAGCCACTGAAAATCCAGAGCCAAGATACTCTGGAATGGGTGAATCAGTCTTATTTGACATACAACCACCAACCTCCCAGGATAACAACCCTCATGAAATCTACCCGTTACCTCGGGGACCCAGGCCAGTCAACCCACAGGTGGTGATTTTGGACGGACAGGACGAAGACATAAATGTTAATGtgttttcttattatgagaAGTGCGCCAACAACAGGCACAAGTGCTCTAGTTTCGCAGATTGCCGAGATTACGACACAGGTTACTGCTGCCATTGTAAGCCTGGCTTTTATGGCAACGGGAAGGAATGTGTCGCTGAGGGCATACCGCAGAGGATGAATGGGAAAGTTAATGGCAGAATCTACGTCGGCAGCGCAAGTTCCCCGGTCGAGTTCTCTAACAACGACTTGCACTCGTATGTAGTAGTGAACGACGGACGAGCTTATGTAGCCATTAGCAGCATCCCAGCCAGCGTCGGCCACTCCCTGCAGCCTCTCGCCTCACTCGGAGGGGTCATTGGCTGGGCCTTTGCCCTGGAGCAGCCGGGATATGAGAATGGCTTCAGCGTAATTGGAGGGGTTTTCACTCGTCAGGCCGAGGTGACCTTTCAGCCAGGTGGAGAGAAACTCTCCATCAACCAGGAGTTCAAAGGAATCGACGAGCACAACCACCTAGTGGTGAGCACTCGGCTGGACGGAAGAATCCCAGAAGTCTCACCTGGTGCCAGTGTCCAAATAGACCCCTACGTCGAGATCTACCAATACGCTAGCAACTTTATAACATCCTCCTCCACGCGGGAATACACAGTAAGCCCCCCTGATGGTCCTGTCAAGACTCTGAACTACCTATGGAGGCAGAGGATCACGTTCCAAAGCTGCCCGCATGCTGATTCTGTTCGCTCCATGCCACCCAGCCAGCAGCTCAGCGTGGACCAGGTGTTCGTCATGTACGACTCTGCCAACCAGCTCATCCGCTATGCCATGAGCAACAAGGTCGGCCCCATCAgTGGAACCCCACAGCAGAACCCGTGTTACACTGGGAGACATGGATGCGACACCAATGCAGTCTGCCACCCTGGTGAGGGAAACCAGTTCACATGCCAGTGTGCTTCAGGCTTCACAGGCGACGGACGCACATGCTACGATATTGATGAATGTGCGGAGACCCCACAGATCTGTGGCGCTTACGCCATCTGCAATAATCATCCCGGGACTTTCCGCTGCGAGTGTATGGACGGCTTCCAGTTCGGCCCCGATGGCCGCACCTGTGTCCAAGTGCACCATGACATCAATCACTCAGAGGGGACACACAACTGTGATATAGCTGAACGCGCCCGCTGCAGCTACACCGGTGGATCAACGTACATCTGCTCCTGTCTGCCCGGCTTCACGGGAGATGGCAGAGCATGCCATGATATTGATGAGTGCCAAACTTCTCGTTGCCATAGAGACGCCATCTGTCACAACACTCAAGGCTCTTTTACCTGTCAGTGCAATACAGGTTTCTACGGCGACGGCTTCAGCTGCACAGCTGATTCAGtgcgTGAGAAAACTGCATGCGAGCGACACAGAGAGACAGCCCTGGCAGCCACGTCTACCGGTGGATATGGCTTCTTCCGGCCACGCCCATCGGTAGGCCAGTACATCCCCACATGTGACCACAATGGAGAGTACATGCCTATGCAGTGCCATGAGAGCATCGGCCAGTGCTGGTGCATGTACCCCAACGGCCAGGAGATCCCTGGAACCCGAACTGGACCAGGAAGCACACCCACATGTGAAGACTTTGTCCCTGTTGGCCCCACCACCAGGCCAGATGTCAGACCACCACCTCCAGGAGCTAATCTTCTATTTGCCCAGAATGGCAAAATAGATAACATCCCACTGGACGGCAGCAACATGAAGAAAGAGGAGACTAAGACCATGCTGCATCTACCAGATAAAGTGGTGATTGCTGTGGCATATGACTGCATGGACAAGATGGTGTACTGGACAGACATCACACAGCCATCCATCAGCAGAGCCAGCGTTCAGGGAGGCCAGCCCACGGCCATTATCACAAAAGATTTAGGAAGTCCTGAAGGAATAGCGATCGACCACCTGTCCCGAAACATGTACTGGACAGACTCCGTTTCGGACCGGATCGAGGTGTCTACGCTAGACGGACAGCATCGACGTGTGCTCTTTGACACTGACCTCGTAAACCCCAGGGCCATCATCACTGACCCTGTCAATGGACGTCTGTACTGGTCAGACTGGAACAGAGACAGCCCTAAGATCGAGATGTCCAACATGGACGGTACAGATAGGACTGTACTTGTGAATGATGGTATAGAACTCCCCAATGGACTGTCCTTTGATCCTCATACCAGGCAACTGTGCTGGGCAGATGCAGGTATACGTAAGGTGGAGTGCATTAACCCTTACACTTGGGTGAGGAGAAAGGTGGTGGAGGGACTGCAGTACCCCTTCAGCATTGTCACCTATGGAAGAAACCTTTACTACACAGACTGGAGAAGGCAAGCTGTGGTATCTGTGGACCATGTGGCAGGGAAAGAGGTGGATGAATTCCTGCCTCAGAAGAGATCGCGCCTGTACGGCGTCACCACCTCGTACCCACAATGCCCTCAAGCTGAAAGGAACTACTGCTCGAGCAATAACGGCGGCTGCTCGCACTTGTGTCTGCCGCGGCCGGGTGGCTTCACCTGCCGCTGTCCTGATGCCCGGGATGACACGTGCATCGAGAGAGACCGTAACATCTGAGAGCGCTTGAATGATGGACACGCAGGTGTGTCAACGAGACGGGGATAAAGCAACACCTGTGACACATGATTCAAGGACAAAAACCATTGCGTATTGTAATTAGGGAGAGAAGATCCATTTCAGCCGCTAAACCCCGCCCCATCACTAAAGTCCTGGGACACTGCAGATGTGATGAAGTAATGTgtgaaagaggaataaatgaaGTTAGACATGGATATGGATATATAAACTGTGAGAGGAGGAGATCTCAGGATAAaatgagaggaagaagagagcaCAAAGAGCTGGGATAGACTGCAGAAGGAAGGAGGAGTGAATATGGTGCTTTTCAAACTGTGACCAATAGGGACGTCCAGGGGTCCGTGAGCCGGGGCAAGAAGGTCCAAGTCAAAACTGGTCCATTTTGCATCTAGGTTCTTGTTGATTGTTGAATTATTAAAATCTTTATAGTTTCAAATTTATTTCAGTATATTATTAACTGGTTATGTGGTAATTAAGTGATTAGTGACAGCATCATGTTTGAAAGTCTTAAGTCATGTGGAGACAAAATATAGCCATACTTCTGCATTTTAGCAAGCAAGTAAATGCCACGTTTTTTTCCTAAGTTAATATGACTATATATGGGGTGTGGGGTGGAAGGGGTGGGATAGTTATGGGCTggatattatcattatattaattatttacgTACATCAATATAATAGTTacaattattttccaattttgTTCTTAGATTACCACTTTTTAATTGTAAAGTAAATGGCTGATATAGAGCcactattttaaaaacatatttcaggtTAAAAgaaacagccaaaaattaaattaacacactttccctctctcccaAATGTAGTccatcagccaagacatgtttcttcttctttatttctacaaatgttgctaacaagtaagCCTCCAATTTAGCATTATACTAGTCTCTCACAAATCTAGACTCCTAACTTTCGCTAGATAAtctggtgggaaaaaaaaaaaaaaacactgccaaGAACCACCTACTTCACAGAAAGAGCCAGTTATACTGACACGGTAGATAACCAACCACAGACCTTTTTCTTTGACCagtttcaaacaaaactctttaATGACTTGATGGAATTTAGACAAGTTTTGTCAGTCCATTGACTATATCTTACTCCATAAAGCTTGTTATCATGGTGTTCAAAAGCTGAAAGGCGGAGCTAATTAGATTGCAACCTTCATGATCCttaagcttgtggccagaaaaatgtacaaaagttaTCAGATTTGACAGAGCAATTGAGGCTCCACCCACAGCTCGCAATGagtctgatatcttttgtacacttgtctggccacaagcttcaggatcttgaaggttgcaatctgattggctgtttgcaCCACTGGTTTCAGATGggaaaacaaacatttgaacCCAGTGACACAATCAACTTTTTGGAGCACGATAGAGtctctatattaaaaaaaaaaaaaaaaagattactaaACTATGTGCAGA

Function

GO: NA

KEGG:

id description
K06826 NID; nidogen (entactin)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210337 lncRNA downstream 6059 7508851 ~ 7509188 (-) True G177682
TU210182 lncRNA downstream 35859 7479158 ~ 7479388 (-) True G177562
TU210179 lncRNA downstream 44037 7470974 ~ 7471210 (-) True G177559
TU210170 lncRNA downstream 72852 7441891 ~ 7442395 (-) True G177550
TU210167 lncRNA downstream 74859 7440179 ~ 7440388 (-) True G177547
TU210347 lncRNA upstream 3702 7551522 ~ 7551750 (-) True G177691
TU210367 lncRNA upstream 128096 7675916 ~ 7676670 (-) False igf1rb
TU210390 lncRNA upstream 159691 7707511 ~ 7755018 (-) True G177729
TU210396 lncRNA upstream 181093 7728913 ~ 7750806 (-) True G177733
TU210491 lncRNA upstream 378473 7926293 ~ 7927058 (-) True G177807
XM_026930575.2 mRNA downstream 14347 7492501 ~ 7500900 (-) True rbm34
XM_026930317.2 mRNA downstream 31130 7480422 ~ 7484117 (-) True si:dkey-56d12.4
XM_026930318.2 mRNA downstream 77757 7434319 ~ 7437490 (-) True irf2bp2b
XM_034308645.1 mRNA downstream 160917 7296707 ~ 7354330 (-) True strn
XM_026930513.2 mRNA downstream 161195 7296707 ~ 7354052 (-) False strn
XM_026930582.2 mRNA upstream 16560 7564380 ~ 7577840 (-) False ero1b
XM_026930583.2 mRNA upstream 16560 7564380 ~ 7576849 (-) True ero1b
XM_034308540.1 mRNA upstream 32614 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XM_026930688.2 mRNA upstream 32614 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XM_034308538.1 mRNA upstream 32614 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
TU210154 other downstream 31289 7481449 ~ 7483958 (-) False si:dkey-56d12.4
TU209010 other downstream 1806982 5696458 ~ 5708265 (-) True LOC113536561
TU209012 other downstream 1806982 5696458 ~ 5708265 (-) False LOC113536561
trnai-uau_2 other downstream 2200993 5314162 ~ 5314254 (-) True trnai-uau_2
trnai-uau_1 other downstream 2224653 5290502 ~ 5290594 (-) True trnai-uau_1
XR_004579066.1 other upstream 32614 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579065.1 other upstream 32614 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579064.1 other upstream 32614 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579063.1 other upstream 32614 7580434 ~ 7588815 (-) True si:ch1073-365p7.2
trnar-acg_4 other upstream 694286 8242106 ~ 8242178 (-) True trnar-acg_4

Expression Profile