RNA id: XM_034308780.1


Basic Information

Item Value
RNA id XM_034308780.1
length 3779
RNA type mRNA
GC content 0.51
exon number 22
gene id LOC113523928
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 26039386 ~ 26062656 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTGCTCTGACACCAAGAGCTCAGCGTGACACCGGAAATggagtagaagaagaagaacatcgCCAGCCGCAGCTAATCTAGCCTAGCCTAGCCTAGCCTTTCTGTCCTGCTCGTTTTCGGAAAAAAAGGGACTCAGAGAGAACTCATAAAGAAGGAAACATGCCGGCGGTTTCTAAAGGAGACGGGATGCGCGGCCTCGCCGTTTTCATCTCCGACATCCGGAACTGTAAAAGTAAGGAGGCAGAGATCAAGAGAATAAACAAAGAGCTGGCCAACATTCGCTCCAAGTTTAAAGgagatAAAGCTCTGGACGGATACAGTAAGAAGAAATATGTGTGTAAgctgctgtttattttcctgctGGGCCACGACATCGACTTCGGCCACATGGAGGCGGTGAACCTTCTCAGCTCCAACAAATACACGGAGAAACAGATCGGCTACCTGTTTATCTCGGTGCTGGTGAACAGCAACAGCGATCTGATCCGCCTCATCAACAACGCCATAAAGAACGACCTGAGCAGCAGGAACCCCACCTTCATGAACCTGGCCCTGCACTGCATCGCCAACGTGGGCAGCAGAGAGATGGCCGAGGCGTTCGCTTCAGAGGTGCCGCGCATCCTGGTGGCAGGagaCACAATGGACAGCGTGAAGCAGAGCGCAGCTCTGTGTTTGTTACGGCTCAACCGGACGTCCCCTGATCTGATCCCCATGGGCGAGTGGACGTCCCGTGTGGTGCATCTTCTCAACGATCAGCACCTGGGAGTGGTGACGGCAGCAACGAGTCTCATCATCACTCTGGCTCAGAAGAACCCAGACGACTTTAAGACCGCCGTGTCTCTGGCTGTGGCCAGACTCAGCAGGATCGTCACGTCAGCATCCACTGACCTGCAGGACTACACGTATTATTTTGTAGCAGCTCCGTGGCTGTCAGTCAAACTGCTCCGCCTACTGCAGTGTTATCCACCACCAgAGGATGCAGCGATTCGTGGACGCCTAACCGAGTGCCTGGAGACGATCCTGAACAAAGCGCAGGAGCCTCCCAAGTCCAAGAAAGTGCAGCACTCCAACGCCAAGAACGCGGTGCTGTTCGAAGCCATCAGTCTCATCATCCATCACGACAGtgaGCCGACCCTGCTGGTGCGAGCCTGTAATCAGTTGGGTCAGTTCCTTCAGCACAGAGAGACGAACCTGCGCTATCTGGCCCTGGAGAGCATGTGCACTCTGGCGAGTTCAGAGTTTTCCCACGAGGCTGTAAAAACCCACATCGACACTGTAATCAATGCACTAAAGaCTGAGCGCGATGTGAGTGTGAGGCAGCGTGCTGTGGATCTTCTCTACGCCATGTGCGACCGCAGCAACGCCAAACAGATTGTGGCGGAGATGCTCAGCTACCTGGAGACAGCCGATTACTCGATCAGAGAAGAGATTGTTTTGAAAGTGGCCATCCTGGCAGAAAAGTACGCAGTGGATTACACGTGGTACGTAGACACCATCCTGAACCTGATCCGCATCGCCGGGGATTACGTAAGCGAGGAGGTGTGGTACCGAGTCATTCAGATCGTCATCAACCGAGATGACGTGCAGGGATATGCTGCGAAAACCGTGTTTGAGGCCCTGCAGGCTCCAGCCTGCCACGAAAACCTGGTCAAAGTGGGCGGCTACATTCTGGGCGAGTTCGGAAATCTTATTGCCGGAGACCCGCGCTCAAGTCCACTTATTCAGTTTAACCTGCTCCACTCGAAGTTCCACCTGTGTTCGGTTCCCACTCGGGCTCTGCTCCTTTCGGCTTACGTCAAGTTCATCAACCTTTTCCCCGAGGTGAAGGGCACCATACAGGAGGTGCTTCGTTCCGACAGTCAGCTGCGTAACGCTGATGTGGAGCTGCAGCAGCGTGCTGTCGAGTACCTGCGCCTCAGCTGCATCGCCAGCACAGATATACTGGCCACAGTGTTGGAGGAGATGCCGCCTTTCCCCGAGCGAGAATCCTCCATCTTGGCtaagctgaagaagaagaaggggtcGGGACCCGGTTCCGAGGTGGACGACAGTCGAAAGGAGCGCAGTGCTAACGTTAACGGGAGCAGCGATCACACCGTGGCCAGCACAAATGCAAAGGTGAACTCTTCTCCTCCGTCTGACCTTCTGAGTTTGGgaaacagcacagctctgaacTCTGCCAGTCCTCCAGCGGCCTCCAACACGGGCAGCCTGCTGGTGGACGTGTTCTCCGAAAACCTGCCTGCAGCCAGTTTCGGTTCCTCTGCATCCATCATCGAGGAAAACCTCTCGAGGTTCGTGTGTAAGAATAACGGTGTCCTGTACGAGAACCAGCTGCTGCAGATTGGCCTAAAGTCTGAATTCAGACAGAACTTGGGCCGCATGTACGTCTTCTATGGAAACAAAACCTCGACACAGTTTATGAATTTCTCCTCCTCTGTGGTGTGCCATGACGCTCTCAGTAATCAGCTGAACGTTCACACGAAAGCGTCCGATCCGGTAATAGACGGAGGAGCTCAGCTTCAGCAGGTCCTCAACATCGAGTGCTTATCCGACTTTGTAGATGCGCCAGTGCTCAATATAcatttcagGTATGGAGGCAGCATCCAGAACATCTCTGTCAGACTTCCCATCACCCTCAACAAGTTCTTCCAGCCCACGGAAATGACGTCTCAAGAGTTCTTTCAGCGCTGGAAGCAGCTCAGCGCTCCTCAGCAGGAGGTGCAAAAGATCTTCAAGGCTAAGCACTCCATGGACACCGAGATCACCAAGGCTAAGattATCGGGTTCGGAACAGCACTGCTAGATGGAGTAGACCCGAATCCTTCTAATTTTGTTGGCGCTGGTGTTATACACACAAAGACAATACAAGTCGGCTGTCTGCTGAGACTAGAGCCCAACACACAAGCACAGATGTACCGGCTCACGCTGAGGACTAGTCGGGACACTGTGTCTCAGAGGCTGTGCGAGCTGCTTTCTGAACAGTTCTGATCGCTGCTGTATCCCATCAGGCCTTGCTAGCCGATGAGGACGGTCCGTCATTTCCTCTCTGAGCGTATAAACACTCTTGCGCTTCCCTGACACACTCCTGATGGTCTGATGTAGCTCATTTCACATCTATCCTTATATACGTCAATATTAATCTGTGTACAGTGTAAATGTCCCTatgaaacttttattttttactcccATATATAAGTGACCTTCTCTGCCCTACATTTAGCGTGACTAATCCTTGTCTGCTTAAATCAGGCCTTCAGCTATATACAAGGCTTTTTTATTATGATTTCTACCATTTTGTTACACACcaaatgcagagagaaaaacgtgtattaaaagaaagaaagctggaCAGAACCCCATCCTGCCTGACGTTACACTGAGTTGAATCCAGTCGCTGAAACAAGTGCCTTGGACTAGTACAGCTGGAACTCTGAGTCCTGTGGAGAGGAAAGATTTCAGTATTTCGTTGATCTCATATAGAGTAAATCAATTCTCAGGGGACGACAGCTTAATTCTTCTTCTAAAGCCTCAGTGGCAGAATCAGTAACAAGTGCTTTGaaagtgatgaaataaaagtgcttgacatttaaaaaaaaaaaaaaaaaaaaaaaaaagtcatggcTTGGCCACTGCCAGCTCTCCACGTGCCTTCAACTTGTGTGTTCCTTCCGACTGTTGCTGTGTGACCGTGCGTCTGTTGTCTGCATCTGATAGCATGCTCTACTCCCAACTTTCAGATGGGTTTTTGCCAATTAAACTACAACATGACACTCTAA

Function

GO: NA

KEGG:

id description
K11824 AP2A; AP-2 complex subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222672 lncRNA upstream 45983 25988798 ~ 25993403 (+) True G188127
TU222482 lncRNA upstream 89414 25941892 ~ 25949972 (+) True G187970
TU222471 lncRNA upstream 119781 25918551 ~ 25919605 (+) True G187961
TU222386 lncRNA upstream 288754 25747110 ~ 25750632 (+) True G187895
TU222258 lncRNA upstream 693895 25345291 ~ 25345491 (+) True G187782
TU222720 lncRNA downstream 46967 26109623 ~ 26109848 (+) True G188168
TU222731 lncRNA downstream 90873 26153529 ~ 26166792 (+) True G188179
TU222738 lncRNA downstream 98658 26161314 ~ 26164756 (+) True G188184
TU222739 lncRNA downstream 99652 26162308 ~ 26164756 (+) False G188184
TU222764 lncRNA downstream 156275 26218931 ~ 26222921 (+) True G188202
XM_026909993.2 mRNA upstream 108797 25924180 ~ 25930589 (+) True tollip
XM_034308508.1 mRNA upstream 342514 25531754 ~ 25696872 (+) True LOC113523924
XM_034308509.1 mRNA upstream 342514 25531754 ~ 25696872 (+) False LOC113523924
XM_026910028.2 mRNA upstream 554576 25455708 ~ 25484810 (+) True slc6a5
XM_034308863.1 mRNA upstream 554576 25456587 ~ 25484810 (+) False slc6a5
XM_034308692.1 mRNA downstream 21001 26083657 ~ 26095138 (+) True slc38a7
XM_034308615.1 mRNA downstream 36868 26099524 ~ 26138619 (+) False helz2a
XM_026910023.2 mRNA downstream 56752 26119408 ~ 26138619 (+) True helz2a
XM_026910854.2 mRNA downstream 147892 26210548 ~ 26212115 (+) True polr2l
XM_026910859.2 mRNA downstream 161161 26223817 ~ 26227916 (+) True LOC113524556
TU222375 other upstream 445883 25531745 ~ 25593503 (+) False LOC113523924
trnar-acg_9 other upstream 532891 25506423 ~ 25506495 (+) True trnar-acg_9
TU221326 other upstream 1828661 24207893 ~ 24210725 (+) True glrx2
TU221328 other upstream 1828661 24207893 ~ 24210725 (+) False glrx2
trnaq-uug_6 other upstream 2092323 23946992 ~ 23947063 (+) True trnaq-uug_6
TU222713 other downstream 123206 26185862 ~ 26212109 (+) False polr2l
TU222716 other downstream 144286 26206942 ~ 26210010 (+) True G188164
TU222712 other downstream 147903 26210559 ~ 26212109 (+) False polr2l
TU222884 other downstream 198021 26260677 ~ 26318575 (+) False syt7b

Expression Profile