RNA id: XM_034308785.1


Basic Information

Item Value
RNA id XM_034308785.1
length 3623
RNA type mRNA
GC content 0.47
exon number 16
gene id ampd3a
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 6621904 ~ 6643123 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATCCAGGGAAGAGAAAGAGCGGAACAGAGGAGACCCAGAAATGCCCCGGCAGTTCCCCAAGGTCACGCTGAGTGACGTGGACGAGGAGGTGCGCCTGCTGGCCGAGAAGGTGTACGCCTCTGCgctgaaggaggaggagaataaGGACGCCATTTCCATGTACACGGTACCTGAAGACTGTCCCATTGGCCTTCAGCAGGCCAAGGAAAGGGAGCTCCTCCGGGAGCTGGCCGAACAGCAATCAGAGGAGACGGCcaagagGAAGAAGAGTTTGAAGATGATTCGATCTCAGTCCATGCAAATCCCTGTTTGTGTGGATTGGGCAAGAGCTACACCCACTCCGCTCGTGTCCCCATCCTCCACCTGTCCCTCCATTCCAGACAACTTCCCCGAGTACCAGAGAGTCACCATCAGTGGGGATTACTGTGCTGGGATCACCGTTGAGGACTACGAGCAAGCAGCTAAAAGTCTTCTGAAGGCATTATTCATCCGGGAGAAATACTCGAAGCTGGCGTACCACCGTTACCCCCAAACCACTGCCAGGTTCTTGCGCAGTGCTGAGAACCTGAAGTGGAGAGAGGAAGATGAAGTCCTGCCAGACATCTGTCCATGCCCTCAGGAAGGAGAGGACCCCTACAGCATGGAGAACATTCCGGAGAACCTGAGCTATGAGCTGAAAATGAAAGATGggattatatatgtgtatgacAATGCGGTGGCTCTCAGGGAGAACAGACCCCACTGTTTGCCGTACCCTGACCTAGAGACGTTTGCCATCGACATGAGCCACGTACTGGCCATGATCGCAGATGGACCcacAAAGACGTACTGCCACAGACGACTGAACTTCCTGAGCTCGAAGTTCTACCTGCATGAGATGCTCAACGAAATGGCTGAGCTTAAAGAACTCAAAGGGGTCCCACATCGAGATTTCTATAACGTCAGGAAGGTAGACACTCACATCCACGCTGCAGCCTGTATGAACCAGAAACATCTGCTTAACTTCATCCAGAGTACCTATAAGACAGACGCAGACCGAGTGGTGCTGGAGAAGGCTGGACAGAGACTGACCCTCAAACAGGTCTTCAACAACCTCAACATGGACCCTTACGACCTCACTGTGGACTCGCTGGACGTCCATGCTGGCAGGCAGACATTTCATCGCTTTGACAAGTTCAACACCAAATATAATCCGGTGGGAGCGAGCGAGTTACGAGAAATCTACCTGAAGACTGACAACTACATCAAGGGCGAGTACTTTGCACGTTTGATAAAGGAAGTTGCTCATGATCTGGAGGAGAGTAAATACCAGCATGCTGAACCCCGCCTTTCTATCTACGGACGTTCTCCGGAGGAGTGGGAAAGCCTTTCCCGTTGGTTTATTCAACATAAAGTCTACTCCCCCAACATGCGCTGGATCATTCAGGTGCCCAGAATATATGATATTTTTATGTCACGGAAGCTGATTCCCAACTTTGCCAAGATGCTGGAGAACATCTTCCTCCCCTTGTTTGAGGCGACTGTGAATCCTCAGAAGCACAAAGAGCTGCATGTGTTCCTTAAATATGTGACCGGCTTTGACAGTGTGGACGACGAGTCCAAGCACAGTGATCACATGTTCTCTTACAAGAGCCCCAAACCTGAGCAATGGACCACCGATGAGAACCCGCCTTACAGCTACTACCTCTTCCACATGTATGCCAACATCATGGTGCTCAACAATCTGCGCAAggagcGAGGTCTGAGTACCTTCCAGTTCCGTCCACACTGTGGTGAGGCCGGCTCCATCACTCATCTGGTCTCAGCTTTTCTCACTGCGGATAACATCTCTCACGGCCTCAACCTCAAGAAGAGCCCCGTCCTTCAGTACCTGTATTACCTGGCCCAGGTACCCATCGCCATGTCCCCCCTCAGTAACAACAGTCTGTTCTTGGAGTACTCGAAGAACCCACTGCGAGAGTTCCTGCACAagggcctgtgtgtgtctctgtccaCTGACGACCCCATGCAGTTCCACTACACCAAGGAAGCCCTAATGGAGGAGTATGCTATCGCAGCCCAGCTCTGGAAGCTGAGCACATGTGATTTATGTGAAATCGCCAGAAACAGCGTGCTGCAGAGCGGCCTCTCTCATCAGGAGAAAAAGCACTTCCTTGGGGCTGACTACTTAAAGGACGGACCCGAAGGGAACGACATCCGGCGCACCAACGTGGCGCAGATCCGCATGGCCTACAGACACGAGACGCTGTGTAACGAGCTCAGCTTCCTGGTGGACGCGGTGAAATCCGAGGCCCTGGGCTCGCAGACATAGTCACAGCAACACATCTGCTGCCATAAGACTGTAgccatacatacacacttgcATGCTGCCTTGTACACAAGACTGCACACATCAGGTATTACTTAATTGCTGCTGCTCGGGTTAgtggaagaaaacaaaacaaaacaacctgCCTCACTGTAATCCACACTGCAAGTCTTCCATGTGAGTCCAGGTCTGCATGCGTGTTCACTGTGGCCTGCAGTTTTGCACTGAGCAGTACATCCTTGGAGATGAAGTGCATCAGGGACTGAGGAGATGCGCAGTAGAAAGCCAATGCAACGGCGCCCCCTGGTGGAGGCGATCATACTTTCATCAACAGACTTGAAACAGGGAAAACTGTAGATTATGCTTTTAGAGTGGTTTTGAGTGTGGaatatgtgcattatttttatatatatatatatatatatatatatatatatatatatatatatatatatatacacacacacacacacacacacacacacacacacacacatacacgtacatGCGCATACTAGATTCTCACCAGTAGAACAATGTTATAATGAGATCTAGGACCCGATCTAGATCCCAATGATGCTGAGTGAAGATACAAACACTGGACCTCATTTATTGAATGTATAAGATACTATAAGAACTTGAAAACAATGTAGCTTTGTAGCTAATGTGCTGTCTGTTCATCCAACACCCTGAAAGCTTTTCCGTTGCATCTAGTGGCCTTTTCTTCCATttaactcagaattcctacaatattgcacatactgtatataaagatatatagcACGTTATTCTTTATTAATACCTGAATAgtatggagagaaaaaaagcaaatgtatcTTTATATTGTTATAGtgataaataaattgttttctaggaggagagaaagaaaaaaaagtctgaaaagaGACATCTGACACTTTTGAAGCTGGATCACTGCCAGTTGCATGCAGtcaactccaaaattattggctcCCTTCATAAAGATCAATCTGAAAGCACAACAAATGCAGTGACTGATATAGAGTGCTTAAATGTATTGGaatggtgtatttattttaacattattactTCAAACATGTTTTCTTAAGTAGACCAAATGTTTCCTGcaaaaacactggtttcaaaagtattggcacctgcATGACACACTTGAAGACACTTTTATGTGCAGaacatttttgtgtggatttgtaATGTTACgtttgtgcatgtgtacacTCGTTTCAATTCCCACTACAAGTTTCAGATTCAGAGTCTGAGATTGGATATCACAAAACACTGATGTCAACACAGgtcttagtaaaaaaaaaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579067.1 lncRNA downstream 32608 6579004 ~ 6589296 (-) False LOC117598400
XR_004579068.1 lncRNA downstream 32608 6580360 ~ 6589296 (-) True LOC117598400
TU209513 lncRNA downstream 70322 6551325 ~ 6551582 (-) True G176991
TU209514 lncRNA downstream 70642 6550914 ~ 6551262 (-) True G176992
TU209512 lncRNA downstream 76834 6543999 ~ 6545070 (-) True G176990
TU209633 lncRNA upstream 95270 6738321 ~ 6738608 (-) True G177097
TU209925 lncRNA upstream 215488 6858539 ~ 6859489 (-) False LOC113536608
TU209973 lncRNA upstream 415481 7058532 ~ 7059550 (-) True G177374
TU210004 lncRNA upstream 494578 7137629 ~ 7138904 (-) True G177404
XR_004579109.1 lncRNA upstream 513177 7156228 ~ 7157621 (-) True LOC117598441
XM_034308556.1 mRNA downstream 54147 6555719 ~ 6567757 (-) True ctr9
XM_026930872.2 mRNA downstream 160078 6358137 ~ 6461826 (-) True galnt18b
XM_026930590.2 mRNA downstream 325028 6227094 ~ 6296876 (-) True LOC113536569
XM_026930304.2 mRNA downstream 512532 6100029 ~ 6109372 (-) False LOC113536415
XM_026930337.2 mRNA upstream 5697 6648748 ~ 6651135 (-) True adma
XM_026930731.2 mRNA upstream 151488 6794539 ~ 6807030 (-) True swap70a
XM_034308534.1 mRNA upstream 166772 6809823 ~ 6816713 (-) True LOC113536768
XM_026930606.2 mRNA upstream 188197 6831248 ~ 6845245 (-) True clcn4
XM_026930663.2 mRNA upstream 213704 6856755 ~ 6861348 (-) True LOC113536608
TU209010 other downstream 913639 5696458 ~ 5708265 (-) True LOC113536561
TU209012 other downstream 913639 5696458 ~ 5708265 (-) False LOC113536561
trnai-uau_2 other downstream 1307650 5314162 ~ 5314254 (-) True trnai-uau_2
trnai-uau_1 other downstream 1331310 5290502 ~ 5290594 (-) True trnai-uau_1
TU208736 other downstream 1425086 5191964 ~ 5196818 (-) False trip4
TU210154 other upstream 838398 7481449 ~ 7483958 (-) False si:dkey-56d12.4
XR_004579066.1 other upstream 937383 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579065.1 other upstream 937383 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579064.1 other upstream 937383 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579063.1 other upstream 937383 7580434 ~ 7588815 (-) True si:ch1073-365p7.2

Expression Profile