RNA id: XM_034308787.1


Basic Information

Item Value
RNA id XM_034308787.1
length 4014
RNA type mRNA
GC content 0.42
exon number 26
gene id vtg3
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19271952 ~ 19287643 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAGGTTATGCCTGATCAGGTGATTTCACTCCTGGCACTCGCCATGCGGTGGattctcttctgtctctttgtGGCCTTGGCTGCAAGCGAGACCACGAATTATGAGCCCACCTTGAACCCCCATAAgacatatgaatataaatatgaaggAGTGGTGAATATTGGGCGTGATACACCAGACCTGGCTGAGTCTGGAGTAAAACTACAGTGCAATTTTAAAATCACTGGAGTATCAGTACAAACCTTTCTATTTCAGATCTCCAATGTAACCTTTGAAGAGTTTAATGGAATCCCCGGAGAGGACTCATTCAAAGTCTCACCTAATCTTACTAAACGTTTGGCAGCTGTACTCACCAAACCCTTCACTTTTGAATACACAAAAGGACAAGTAATTGACATTAAAACAGCACCTGACGTCTCCAACACTATTGTGAACATAGTGCGAGGTATTCTAAAGTTCCTGCATGTTACAATCAAAACCACCCAGCGGATTTATGAACTTGATGAGGTGGGAATTCATGGTATCTGCCACAGTGCTTATGTTATTGAAGAGAATGCAGCAGCTAAAGAATTATATGTGACCCAAAACATTGACATTAAAAACTGCCAtcaaaaagcagaaatatatCAAGGAATGGCACTGGCTCAAGAAAGTAAAATCAGCAGGGAGAGAGGTGAAAATGTGGTTGCTACTGTGAAATATGCATATACAGTGAAGTCTATGGGAAGCGTTGGTCTCATTACAAAGGCCTCTGCACATGAAAGGCACTACTTCTCTCCATTCAATGTGAAGGGTGGCAATTCTAAACTGAAAGCCATCTGGAACATTGAGCTACTCAAACAGGCCGACATTGCTGGCAAACCTCTGACAGGTCAGGTGAAAAGCAGGGGAAATATGATGTACAAGGCAGAGAAAGATCTAGGGCCAATGCCAGTTCTAATGATCAGTCTAACTAACCCAGCTCCTAAGATTGCAGACCTGATCAAACGTTTGGCTCAGGCTCACATCTACCAGGTGAACGCTGCCACGAGTGCTGACATTCTTGAGCTTATTCAACTGCTTCGTGCAACTAGTTATGAAGATCTGGAGCTTTTATGGAAACAGCTATCAGGAAATGATGAGCACAGGAGGTGGTTTCTGGATACAGTTGTTGAGGTGACAGATGGGAGGGTCCTCAAATTCCTGAAGAACAGATTCAAGGCTGGAGACATTTCTGCAAATGAGGCTGGACAGGCAATCCTGGTGGCATTCAACCATCTATCTGCTGAATCTGAATTAGTAGAAATGGCAAAGGAGTTTTTGACCATCCCATTTAGTAAGTCCCATCCTATGCTATGGAACACTGTGATCCTTTCGTATGGTTCTCTGgtatacagagtgtgtgatCGTGTGAATCCCTGCCCAGTCCTCACAGTGCAGCCGCTGCTCGATATGGCCACTAATGGACTCACTAAAGGCATTGATGAAGACATGGTGATTGCTCTGAAGGCCTTGGGAAACGCCGGACATCCATTAAGCCTTAAGACCATAATGAAGTTCCTTCCTGGATTCTCTGTCAAAGCTGATAGCCTCCCCACTAGGGTTCAGAGTGTGGCTGTGCAGTCCCTCCGGCACCTCGCCATCAGAGATCCACATAATGTCCAGGACATTGTCCTAACCATAATTGCAGAAAGGACTGTTCCTGTTGAAATAAGAATGTTAGCATCTGTGATCTTCCTGGAGACAAAGCCATCTCTAGCACTGATCTCCACACTGACTGAGCTTCTGCTCCAGGAAACAGACCTCCAAGTCGCAAGCTTCATTTACTCACAACTCAGAGGCATCGCAAGGTCACGCATCCCTGATGATCATTACCTCTCAACTGTTTGTAATATCGCAGTAAAAATACTTTCTCGGAAGCTGGGTTGGCTAAGTTATCGATTTAGTAAGGCACTACGTTTCGACTGGTTCAGAGATGACCTTTTGATGGGCACATCCAGAGTACTGTATTTGCTGAAAAATGGTACAAGTGCCATACCCACAGAAATCATTTCTAATGGAAGGCTTTACTTCATTGGAAGAGTATTTCAACTTCTTGATCTTGGTGTTCGTGCAGAGGGTCTCAAAGAGTTATTCCGAGATAGACCTGGCATTTCCAAGGATTTTGGAGTTACTGATTTTGCAGCTATCATGAAAATTCTCTCAGATTGGCAGTCCCTCCCTAAAAATAAACCTCTCTTATCAGTATTTTTGAGATTCTTTGGGCAAGAGGTCTCATTTTTTGATTTAAATCAAGATGTTGTTCAAAGAATCCTAAAGTCTGTGAGCCTTACTGCAAATAAAGACAATAAACTATGGGATCTTATTCAACAACTACAAAAAGGAATATCATGGCACTGGACAAAACCATTCCTTATGTTTGAAACCAGATTTGTTCAGCCAACCTGTCTTGGCCTCCCAGTTGAAATGAGCAAATATTATTCTACATTAGCAGCTGTTACTGTAAACGCAAAAGCTAACATCGACCCACCTCCAAAAGAAAGTTTACAGGAACTGATAGATGCAGatatttttgtggaaacagATGGATTTgctggAGTGGCAATGGATTATTTTGTCTTCCATGGGATCAATACAGATCTTTTCCAGTCTGGTGTCCAGCTGAATGGCAAGACAACCATGTCTTTGCCTTGGAAAGCTGGCTGGAAAAAGAacataaaagagaaaaattacGAGATCACTTTTCCCCCATGCAAAAAACCCACAGAGTTCTTCAAAATCAAATTCAACGTATATGCAGCATCAAGAAATATTGAAGATCCATCATTGGCTAAAATGACTCCTCTGATACCAGAGCACAGAGATCCTGAGCAAAGTTTCATCAAGAAAGACACAGATAGACACAAAGAGTATCAGGTAGAACCGTGGGAGATATATCAACCAAAATGGAAGTACTGTGCAGAATTAAGCTCTTATGGAGCTGCAGTGTGCACTGAACTGGAAGCTAAACGGGTCCAAAACCTTAAAGACCATCCTCTTTACTACTTCTTGGGATACACTCAGTTCTCATGTCAACTTGAGCCGGTCAGGTCTGTTAAGCCTGTAGAAAAGATCAAAATCCAGATCAGTGCTGGGcctcataaacacatttcacacCACAATCAAATGATGACTGTCACTCAGGAAAAATTCAAGGTACTtcataataataataataataataataataataataatagatgcTCATACCTCCATTTCAGattttaatgcatgtttataatgtaGGGTATTGATGTCACTCCTGATCCTGTGATCATGGTGAAAGTGCTGGCTCTCAGTCCTAATGTGAAGCCGCTGGGTTATGAGGCCACTGTGTATTACAcaccagacagacagaaggatgaCATAGAAATCATTATATCTGAAGCTGCTGAAGAGACGAACTGGAAAATATGTGTTGATGCCAATATTGACAAGATTCAAACAGGAGCAAAGACTCACTTCAAATGGGGAGCTGAGTGTCAGACGTATGAAGTAGCAGTAAAGGTTTCTGCCAAAGGAGAATCAAAGCCCACTATAATAGCAGAAATTAACTGGGGAGATGTTCCTGCATTAATCCAAACATTCGGCCAAAGTGTTCGAGAGTACTTCCCGGGTGCGTCCTATGCCTGGGGGTTCAGTCAGAAACATGAGAAAAATACTGAACGTGAAGTTTCAGCTACACTTCTGGCTTCTGCTCAAGGAGGATTTGATCTTGAAGTCAAAATTCCAGAGCTAACTGTGTATCGCCAGGGAATCTCCTCTCCGTTTGAAAATGTGGGAATTGAAAGTGCAGCAACATGTCCTGTATAACCACTATTTTACCTTTTCACTGTATATCACACTACACTGATTATATTTTCCAGCAATGTCACACATTCCCATTGTCACACGGTACAAAATTAAGTTCTAATGGCTGTTATTGCTAATTCGTCTATAAACTAATACAATTATTGTATGCTAAATGTTATAATTTGAATCATTTTGATGTAATT

Function

GO:

id name namespace
GO:0071391 cellular response to estrogen stimulus biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218173 lncRNA upstream 190467 19081252 ~ 19081485 (+) True G184340
TU218141 lncRNA upstream 259340 19012407 ~ 19012612 (+) True G184309
TU217958 lncRNA upstream 377077 18891239 ~ 18894875 (+) True G184167
TU217565 lncRNA upstream 667030 18598718 ~ 18604922 (+) True G183796
TU217566 lncRNA upstream 674712 18593698 ~ 18597240 (+) True G183797
TU218370 lncRNA downstream 172175 19459818 ~ 19461690 (+) True G184504
TU218369 lncRNA downstream 174181 19461824 ~ 19462843 (+) True G184503
TU218362 lncRNA downstream 198729 19486372 ~ 19487778 (+) False smim7
TU218363 lncRNA downstream 198729 19486372 ~ 19487778 (+) True smim7
TU218480 lncRNA downstream 239234 19526877 ~ 19545502 (+) False LOC113546543
XM_026933503.2 mRNA upstream 1691 19254931 ~ 19270261 (+) True adgrl4
XM_034308722.1 mRNA upstream 301405 18912318 ~ 18970547 (+) True ttll7
XM_034308724.1 mRNA upstream 301405 18912318 ~ 18970547 (+) False ttll7
XM_034308723.1 mRNA upstream 301405 18912633 ~ 18970547 (+) False ttll7
XM_034308725.1 mRNA upstream 301405 18912897 ~ 18970547 (+) False ttll7
XM_034308908.1 mRNA downstream 1624 19289267 ~ 19297548 (+) True LOC113533188
XM_026928468.2 mRNA downstream 12978 19300621 ~ 19309461 (+) True mpv17l2
XM_026910829.2 mRNA downstream 31644 19319287 ~ 19322971 (+) False LOC113524462
XM_026910899.2 mRNA downstream 31781 19319424 ~ 19322971 (+) False LOC113524462
XM_026910752.2 mRNA downstream 31786 19319429 ~ 19322971 (+) True LOC113524462
TU218227 other upstream 2730 19254957 ~ 19269222 (+) False adgrl4
TU217312 other upstream 1475333 17795445 ~ 17796619 (+) True G183549
TU217273 other upstream 1490139 17773713 ~ 17781813 (+) False ect2
XR_004579060.1 other upstream 1520450 17672171 ~ 17751502 (+) True mcf2l2
XR_003403373.2 other upstream 1522661 17672171 ~ 17749291 (+) False mcf2l2
TU218488 other downstream 244438 19532081 ~ 19553522 (+) False si:ch73-40i7.5
TU218486 other downstream 262739 19550382 ~ 19553522 (+) False si:ch73-40i7.5
TU218602 other downstream 407601 19695244 ~ 19700274 (+) True rps15
XR_004579107.1 other downstream 540343 19827986 ~ 19834414 (+) False tax1bp3
XR_003403385.2 other downstream 578155 19865798 ~ 19871463 (+) True ccl44

Expression Profile