RNA id: XM_034308801.1


Basic Information

Item Value
RNA id XM_034308801.1
length 1573
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC113536728
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 4142637 ~ 4145671 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTGAATCACTTAATGACACCAGAATGGATAATTCCGATTACATCACTAAATGAGAGTTTGGGGTTCAGAGAGAGATTCAGAGTGAGAGGAGGCAGGAGGGATTTttagctgagagagagagagagagagagagagagagtgagtcacAGTGAGAGGACACAGAAAGGTTGTTCAGCTAAAATGTTGTGGCAAGAGAAGCAGCTCATTGAAAACAAGATGGAAGACACCAAAACGTGGGTCCTTCAGAAACTCCTGAAGGAAAGAGAGTTTACCTGCACTGAAATTGAACTCCGCTGCAAAGAACTCATCCAAGAATGGTGCACGGAGAAGGAGAAGAGCAGGATGGATGAGAAGAACAACTGGATTAAGGATGTATTGGCAGTTGAGAAGATGGGACCGAGTACAGACtggatgtatgtgtgtaggAAAGAGATGCAGAAGATGAGAGAAGAATGGCTCAAGGAGGACAGGCTGAGGCGCACTCAGGAAAATAAGACGTGGAGAATGGAAGAAGAGAAACGAAcggaggaagagaggaggaggtCGGATGAACAAATGGCCCTGGAGGAAAGGCTGAAGAAGATGGAAAAAAGAGTTTGCGAGTTCGAGAATGCCAGGGAGAGAATGGAGAAGGAGAgagtaaaagaaagagaagagatgaAAGAATACAATAAGAGGATAAAGGCTGatagggagaaagagagggatgaGATGAAACAGTACAAGGAAATGatgcagagggagagagataaagaaagagaggagatgaAAGAATACGAGGCAATGAttcagagggagagagaaaaagaaagagaggagatgaAGCATTACATGGAGAAGTTACAGGAGAGCCAGAGAGCGCTAGAAAAGGAACGAGGGTTGATGCATGAAGAGAGGGAGAAGATcgaggaagagtggaataaagaaaagaaatggatGGCACAATGCATTGAGGAAGAGGAGGCTGAAAAGCTTGAGCTTAAAAGAGCAATGTGGTGGATGAGAACAGAAAGAAATCAGGAAAAACAGCAGTTAAAGATTTATCAGCAGAGGGATGAAGTGAGGATGAGGGAGATGGAGCACCTGAGGAGAGAGGTGGTTGAAAAACTGGATGCGCAGAAAGAAAAGTTAGAGAATGTgttcaaagagagagagatgagaatgCAAAAGTgggaaagaaagcaagaaatgaTAAGCGAGGACCATCAGAGAGGATGGAAGACCGCAAGGTTGGAACTGCAGAATGCAAAAAGGATTAAGGAGGAAAGCGAGAGGAGGACAAAGGAGCTGGCCAGAGATATGTCTTTACAGTATTTAGAGTTGGAGGCCAAGCTTTTAACCATTGTGAAGGAGTTTGCTGAAGCAATGGGAGATATTGAGGGGTGCTCCAGAAGAAGATTAAAGGAGATAGAGTTAAGAGTGAAGGAGATGCTGGAGCAGGACAGGAGAATGACCGCCAACAACAAGTCAGCTGGGTCTactggaaaagaaaggaaggagcAGAGAAAGAAGTGGAGCTTGTTCAGTAGACGGTTTAAGAAATGAGATgcagaaaaaacatggacatcaGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207924 lncRNA upstream 131404 4010238 ~ 4011233 (+) True G175703
TU207713 lncRNA upstream 495913 3645743 ~ 3646724 (+) False pth1b
TU207699 lncRNA upstream 528240 3614191 ~ 3614397 (+) True G175527
TU207689 lncRNA upstream 533793 3605162 ~ 3608844 (+) True G175517
TU207662 lncRNA upstream 560698 3579978 ~ 3581939 (+) True G175493
TU207982 lncRNA downstream 22516 4168187 ~ 4168401 (+) True G175744
TU208084 lncRNA downstream 154434 4300105 ~ 4300563 (+) True G175827
TU208102 lncRNA downstream 222936 4368607 ~ 4368810 (+) True G175843
TU208155 lncRNA downstream 240114 4385785 ~ 4385994 (+) True G175894
TU208168 lncRNA downstream 363745 4509416 ~ 4509701 (+) True G175905
XM_026930858.2 mRNA upstream 5249 4131602 ~ 4137388 (+) True sinhcafl
XM_026930859.2 mRNA upstream 5249 4131739 ~ 4137388 (+) False sinhcafl
XM_034308802.1 mRNA upstream 5249 4131940 ~ 4137388 (+) False sinhcafl
XM_026930853.2 mRNA upstream 14083 4079858 ~ 4128554 (+) True dennd5a
XM_026930874.2 mRNA upstream 64909 4066579 ~ 4077728 (+) False tmem41b
XM_026930437.2 mRNA downstream 61287 4206958 ~ 4228964 (+) True mmp15b
XM_026930420.2 mRNA downstream 135573 4281244 ~ 4297247 (+) False nadsyn1
XM_034308572.1 mRNA downstream 135575 4281246 ~ 4299367 (+) True nadsyn1
XM_034308571.1 mRNA downstream 156600 4302271 ~ 4322689 (+) True tpcn2
XM_034308570.1 mRNA downstream 156601 4302272 ~ 4322689 (+) False tpcn2
TU207714 other upstream 484361 3647370 ~ 3658276 (+) False btbd10b
TU206600 other upstream 2064010 2078077 ~ 2078627 (+) True G174546
TU206587 other upstream 2082354 2058970 ~ 2060283 (+) True G174536
TU205870 other upstream 2777706 1361782 ~ 1364931 (+) True G173898
TU205778 other upstream 3399927 742021 ~ 742710 (+) True G173819
XR_004579071.1 other downstream 135573 4281244 ~ 4297247 (+) False nadsyn1
TU208265 other downstream 510934 4656605 ~ 4661136 (+) True G175977
XR_003403680.2 other downstream 2976714 7122385 ~ 7131506 (+) False LOC113536390
TU209855 other downstream 3122213 7267884 ~ 7271320 (+) False rpl37a
trnae-cuc_24 other downstream 3456555 7602226 ~ 7602297 (+) True trnae-cuc_24

Expression Profile