RNA id: XM_034308807.1


Basic Information

Item Value
RNA id XM_034308807.1
length 2693
RNA type mRNA
GC content 0.48
exon number 18
gene id ncl
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 11409068 ~ 11419817 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGTGAGTGGGAGGAGACGTGTTGAGGCGCTTCACCGTGCTGCAGCGTCTCTTGTACTATCTAACTGAGTGCACACCAGGCTGCTGAAGTGAACCACGTGTGAGTGAGCTGCGGTAAAAAAAGATTAGTTTTAACTCATTATTATCGTGTTTCAGTGAAACACCGCCCAGCCATGGTGAAACTCGCGAAGGCGTCGAAAAAACAAGTGAAGGAAGCACCACCGAAGAAAAAGGCTCCTCCACCTCCAAAGGAAGTCGAAGAGTCCAGTGAGGAGGACAGTGATGAAGATGACGAAGAAGAGGCGCCACCACCCAAAGCTGCAGCCAAGAAGAACGCAACTCCAGCGAAGGcagtgaaaaatggaaaaactcCTGCCAAACAAGAAAGTGAAGACGATGATGACGACGACGAATCTGAGGAAGAGGCTCCTCCAGCTAAAGTGGCTAAAGCTCCAGCCGCTAAAGCAGCCCCTGCCAAGAAAGCAGCAGCTGTTGCTGCAGAATCAGATGacgaggatgatgaggatgacgacgatgatgaaGAATCTGAGGAGGAACCACCCAAAAAGGCTACCCCTGCTAAATCAGCCAAGGCCACCCCTGCTAAAGCGACACCTGTGAAGGCTAAAGCTGCTCCTGCAAAGAAGGAGGAGTCTGATGAGgatgatgacgacgacgatGATGATGATGAATCAGAAGAGGAGGAAGCTCCGCCTCCTAAAAAAGCAGCTCCTGCTAAACCTGCTGCTAAAGCAGCTCCAGCTAAAGAGGAAtctgaggatgaagatgatgaatcggaagaggaggaagaggaaatggACACAACACCTGCACCAGCCAAAAAAGCAGCAGTGAAGAAGGCCAAGGAAGAATCTAGaagagaggaggatgaggacgatgaagaggaggatgatgaggacgatgaagaggatgatgaagaggacGAGGAAGCTGCTCCTGTAACACCAGGAAAGAGGAAGGCTGACGTAAAGAAGGACAAAGAAACACCACCGGCTAAAAAAGCCAAATCTGATGGAGAAGTTGTCAGTTTGTTTATGGGTAACCTGAACTCAGATAAGAGTTTTGAAGAAATTAAAGAAGGCATCGGCAAATTCTTCAAGAAAGAGGGCCTTGTTATTCAGGATGTCCGTCTTGGAGGGTCCAAGAAGTTTGGTTATGTCGACTTTGGCACAGAAGAGGAGCTTCAGCAAGCCCTCGGTCTCAACGGGAAGAAGTTTATGGGTCAGCCGATCAAACTGGACCGAGCGAGAAGTAAAGAGGACTCTCAAGAAAGCAAAAAGGAGAGAGATGCCCGGACTCTGTTTGTGAAAAATCTGCCATACTCCATAACCTCAGATGAGCTGAAGGAGATTTTTGACCAAGCACTGGATATCAGGATACCCGTCGGCCACAACGGCACCAGCAGAGGAATTGCGTACATTGAATTCAAGACGGAAGCAATCGCTGAGAAAATGTTGGAGGAGACGCAGGGTTCAGATGTTCAGGGCCGATCCATCATGGTGGACTTCACAGGCGCCAAAAGCCGACAGAGCGGCAAAGGACCGGCTTCTGCACCTGCAAACAAGGTTCTGGTTGTAAATAATCTAGCGTTCAGTGCCACAGAGGAGTCTCTGCAGAGCGTGTTTGAGAAAGCCGTCGCTATCAGAATACCACAGAATAATGGCCGGCCGAAAGGGTATGCCTTTGTCGAGTTTGAAAACACAGATGATGCCAAGGAGGCGCTGGATTCATGCAATAACACAGAAATCGAAGGCAGGAGCATCAGACTGGAGTTCAGCCAGAGTAGAGGAGAGGGCGGAGGACGAGGAGGATCAGGACCCACAAAAACGCTGTTTGTTAAAGGCCTGTCAGAGGAAACAACTGATCAGACTCTGAGGGACGCATTCGAGGGCGCTGTCGCTGCCAGAATCGCCACAGATAAAGATACAGGATCCTGTAAAgggtaCGGTTTTGTCGACTTCGACAGCGAGGAAGACTGCAAAGCAGCGAAGGAAGCGATGGACGATGCAGAGATTGATGGAAACAAAGTGACTCTGGACTATGCCAAGCcaaaaggagaaggaggaagaggaggaggacgaggagggtTCGGAGGCggcagaggaggaggacgaggaggatttggagggagaggaggaggaaggggaggatttagaggagggagaggaggaggtggaCACCGTGGAGGAGGAAGGGGAGGATTCAGAGgtgGCCGAGGTGGCGGAGCCGGAGCAAAACCTCAAGGAAAGAAGATCAGATTTGACGATTAAAAACTACTctctattttttaatatttccaaATAAACGGACTGTGTTTCTGCTCGAATGGTCTTTGGGACATTCCAGCATCTCAATAATTAATGGAGCGTCCatcttttttctgtctgaaagcTTCCTGCATTCTCAAATGTTCCTCTTCATCTGTGCGCATCTTCATGTTTTCCCCAATTTTGCGGGAGAAAAATtgaagtgtgaatgaatgttgttttttttttttttttttttttttttatttttactgtttttgttaaaatatcCCTAAATGatttattgtctgttttttttagtttgctttAGGTGCGTGTTTTACCATAAACTGTACAAAGCATATTATAAAAGATGAACGATTAAACATGCCCAAAAATGTGTTTGGGCTTTTTGAAATCTGGTTAA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K11294 NCL, NSR1; nucleolin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212671 lncRNA upstream 1654 11404359 ~ 11407414 (+) True G179753
TU212674 lncRNA upstream 7634 11400924 ~ 11401434 (+) True G179754
TU212604 lncRNA upstream 213381 11194836 ~ 11195687 (+) True G179696
TU212593 lncRNA upstream 245689 11163021 ~ 11163379 (+) True G179685
TU212553 lncRNA upstream 254305 11152149 ~ 11154763 (+) True G179648
TU212682 lncRNA downstream 8796 11428613 ~ 11430897 (+) True G179758
TU212705 lncRNA downstream 51529 11471346 ~ 11473207 (+) True G179773
TU212710 lncRNA downstream 53751 11473568 ~ 11475147 (+) True G179775
TU212715 lncRNA downstream 58531 11478348 ~ 11530003 (+) True G179779
TU212723 lncRNA downstream 96930 11516747 ~ 11518939 (+) True G179786
XM_026930646.2 mRNA upstream 6104 11395207 ~ 11402964 (+) False ppp1r2
XM_026930645.2 mRNA upstream 6105 11395208 ~ 11402963 (+) True ppp1r2
XM_026930287.2 mRNA upstream 16122 11384806 ~ 11392946 (+) True alpi.2
XM_034308527.1 mRNA upstream 29073 11360964 ~ 11379995 (+) True alpi.1
XM_026930852.2 mRNA upstream 227214 11176097 ~ 11181854 (+) True b3gnt7
XM_026930520.2 mRNA downstream 27136 11446953 ~ 11457408 (+) True htr2b
XM_026930521.2 mRNA downstream 27136 11446953 ~ 11457408 (+) False htr2b
XM_026930554.2 mRNA downstream 131709 11551526 ~ 11562360 (+) True ttc14
XM_026930536.2 mRNA downstream 435802 11855619 ~ 11861835 (+) True dnajc19
XM_034308815.1 mRNA downstream 480579 11900396 ~ 11958703 (+) True atp11b
TU212545 other upstream 247471 11160386 ~ 11161597 (+) True G179643
TU212547 other upstream 247851 11160386 ~ 11161217 (+) False G179643
TU212546 other upstream 247943 11160346 ~ 11161125 (+) False G179643
TU212529 other upstream 310257 11096153 ~ 11098811 (+) True G179632
TU210703 other upstream 3138319 8253421 ~ 8270749 (+) True LOC113536578
TU212683 other downstream 8796 11428613 ~ 11429339 (+) False G179758
TU213106 other downstream 635141 12054958 ~ 12055749 (+) True G180121
TU213163 other downstream 908249 12328066 ~ 12333631 (+) False timm13
trnag-ucc_15 other downstream 968353 12388170 ~ 12388241 (+) True trnag-ucc_15
TU213294 other downstream 1153376 12573193 ~ 12602064 (+) False LOC117598398

Expression Profile