RNA id: XM_034308819.1


Basic Information

Item Value
RNA id XM_034308819.1
length 2019
RNA type mRNA
GC content 0.42
exon number 11
gene id impact
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 13319943 ~ 13368258 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTACATTAATGTTAAACAAGTACACGTGTTTGAATCACTTCCCAGGTCATTGTGATTGCTATAGGCACAATCTCAAATGTCTCCCTGTTGGATATGTATAGCACTACAAAGGGTACACTTTCTTAATCCATGTAGTGCACATGTTTAGGGCGTATAGAGTGGATTGGGATTTACCCGGCGTGTCAGAAATGTGCTAGCAAACCTGAGTACACTacacaaacagcaaaataaaaaatatgaaatgaaaataaatggacACAATCACAGAAAATGGCGGCGATCTGCAGCGACAGGTTGAAGAAATCGAAGCACTTTCCTCTATCTATGGGGAGGAGTGGTGTGTGATCGACGAGGCGTCGAGGGTCTTTTGCATCAAAATATCAGATGATATTTCTGAGCccaaatgttctgtttgttTACAGGTCATACTGCCTGAAGACTACCCAAGCTCCTCGCCTCCAATATACCAAATCAATGCTGCATGGTTAAGAGGTCCAGACAGAATCACACTGTCAAACAGCCTCGAGGAACTCTATCTGGAAAATCCTGGAGAGAGCATCTTATACCTGTGGGTGGAGAAAATTCGAGAATTCCTGGTAGACAGATCGCAAAATGCAAACACAGTAGATGGACTGGAGCCACGGCATGCAAAGATGACAGAGGAACAGGACGACGACTGGGATGAGGGTGAAATTCCAGATTACGGCATCTTGAGGCTCAGCAGTGAGCAGGCGCACCTTTTCTCCATCTCCTCCGCAGGCACGAGCTCCCAAGAGATTAAACATGGCGAGGCAATCACAGACAGACGCAGCACGTTCCAGCCTCATTTAGCTCTCGTAGTGACACCTAAACAGGTCCAGAGGGTGCTAGACAAACTGtatgaaaacaagaaaattgCAAGTGCCACCCACAACATATACGCATACAGGATATACTGCGAAGACAAAAACACATTCCTCCAGGATTGTGAGGACGACGGAGAGACAGCTGCTGGTGGGAGACTGCTTCATCtactgcagATTCTGGATGTGAGGAATGTGCTCGTGGTGGTGTCGCGATGGTACGGTGGTATCTTGCTCGGCCCTGACCGCTTCAAACACATCAACAACTGTGCTAGGAGCATCCTTGTCCAAGAGGGCTACACTGAAACTTTGGATGAAGCATCAAAACCAGGGGGAAAGAGCAAGAAGCCCAAAAGCAAGAAGATGAAGTGAAGTCATATGTGTTTTATAGTGTCTCAGGGATGTGTGTCTCACGGGCAGGTGTGAGTGGATAAGGAAGTAAACGTTTAATACAGCAGAAGAAAAGAAGCAATGACTGAAGTTCTGACAACAAGGACGTTGACAGTTTTTAACAGCATAAATTTGTCATACTTAAAATGTTGTATATGAAAAGTGaatttacataatatatatatatatttttttttgtaattagaACTGGTCAAGGACGTTCCTTCAAGCTTCATTGAGTCTATGATTTGGGATTTGCATACTGATTTGTAAATCAAGGCATAATTGTCTTTTGTATGTGTCTGTTAGCATGAAGCATTGTCtcccatctgtgtgtgtgtgtgtgtttggaggggTGTTAATGCTGGCAGCAAGGCGATGTGTCAAAGCCTCTGTTTCTCGCAATCCTTTTATAACAGATAGATAGTCAccatcattaaaacattttcagcgAGCTTTGATGAGAGTCCTTACATTGTTTTCAACTGCTCAACTATTTATGCAAATCCTTAAGCATAGACACTTTTTAATCTCCTGTGTCACTAAAAGTTGATTTAATCAGAATTGAAAAGGTTGTTTTGACCTCTATCTCTGAACACCAGCATGCTTCTGTTAGTAATAACAGAGGAGATAACATCAAATACCAGACTGAGAAAAATTAGATACAAGTGTTACATAGAAATAGACTGTTTATGATGTTCTATTATTATTTGCTTCATTTGATGTGACTTCTAAATGgccttaattaaaaaataaagataccAGAGCGTAATCTGAGATTTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214029 lncRNA upstream 17646 13299280 ~ 13302297 (+) True G180833
TU213916 lncRNA upstream 34873 13201871 ~ 13285070 (+) True G180738
TU213946 lncRNA upstream 80360 13236477 ~ 13239583 (+) False aqp12
TU213871 lncRNA upstream 116795 13136137 ~ 13203148 (+) True G180695
TU213678 lncRNA upstream 468764 12850960 ~ 12851179 (+) True G180534
TU214035 lncRNA downstream 33629 13401887 ~ 13406255 (+) True G180838
TU214147 lncRNA downstream 79687 13447945 ~ 13448184 (+) True G180926
TU214166 lncRNA downstream 261437 13629695 ~ 13640963 (+) True G180945
TU214388 lncRNA downstream 729402 14097660 ~ 14100987 (+) True G181136
TU214419 lncRNA downstream 777615 14145873 ~ 14293381 (+) True G181157
XM_026927676.2 mRNA upstream 6496 13308441 ~ 13313447 (+) False cep19
XM_026927683.2 mRNA upstream 6496 13308671 ~ 13313447 (+) True cep19
XM_034308910.1 mRNA upstream 6496 13308848 ~ 13313447 (+) False cep19
XM_034308887.1 mRNA upstream 39431 13277958 ~ 13280512 (+) True LOC117598427
XM_026930329.2 mRNA upstream 80306 13236998 ~ 13239637 (+) True aqp12
XM_026923575.2 mRNA downstream 11538 13379796 ~ 13397775 (+) True LOC113532271
XM_026942260.1 mRNA downstream 58412 13426670 ~ 13430143 (+) True rpl36
XM_026927604.2 mRNA downstream 81201 13449459 ~ 13461109 (+) True ftsj3
XM_034308542.1 mRNA downstream 94022 13462280 ~ 13468477 (+) True lim2.2
XM_034308543.1 mRNA downstream 94022 13462280 ~ 13468477 (+) False lim2.2
TU214031 other upstream 14227 13301255 ~ 13305716 (+) True G180834
trnag-gcc_17 other upstream 44387 13275486 ~ 13275556 (+) True trnag-gcc_17
trnag-gcc_16 other upstream 46326 13273548 ~ 13273617 (+) True trnag-gcc_16
trnag-gcc_15 other upstream 50214 13269656 ~ 13269729 (+) True trnag-gcc_15
trnag-gcc_14 other upstream 52166 13267707 ~ 13267777 (+) True trnag-gcc_14
TU214157 other downstream 127332 13495590 ~ 13495985 (+) True G180936
TU214440 other downstream 796768 14165026 ~ 14174218 (+) True G181175
TU214656 other downstream 1193432 14561690 ~ 14562966 (+) False LOC113540185
TU214729 other downstream 1221661 14589919 ~ 14594615 (+) False ankrd29
XR_004579085.1 other downstream 1254285 14622543 ~ 14646822 (+) True si:dkey-121a11.3

Expression Profile