RNA id: XM_034308861.1


Basic Information

Item Value
RNA id XM_034308861.1
length 1422
RNA type mRNA
GC content 0.39
exon number 3
gene id si:ch211-1a19.2
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 20719431 ~ 20721806 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tccaaacacacactcgggATCTCTCGACATAACCACCACTACACGCCATAAGCACCTGAGTGTGCAGTGAGTGTACACTGAAGACACCCTGACAATGCGAGCGGAGACCCTGATTACAGGCTTACTTTTGCTGAGaatttcagaatttcacagCTTAAGTGAAGGACAACTGGACcctaaaataatatcatttagTCGAGGTGTTCACCTATTTGTTAAAGGTATACATGTCAAGACTGTGGCTCCCAAACTACAGATCTTGCTACCCGCTGGACTTTGGATGGAGACGTGTGACGCCGCCATACTTACATGTATCATCACAGGATTACACACCAAACCAACACACATCACTTGGAAGATTAATAAGATCTCAGTGACACAAAACCACACCACGGCTGACATCTTCATGGAGTCTGATGGCACATTCACTGCTTTAGGGCTCTTTTACCCCACACCAGGTCATGAGCTGAAGAGCGATGACTTATACAGGTGTGAGGTTGAGCAAGGAGGAATAACTTACTATGAAGAAGTATGGCCATTTCACTGTGAACAGTCACTGTGACATCTTGTGGTTTTATATGATGCATTTTGGACTCGTTGGGTTGTTATATTTACTACTTATATGGATAGTACCATATAAAGACCCTATTCAGAGTTGCCAGGTCTGTGTTTTCCTGTGGAATTAGGTTACTTTCTattctgtaaatattacattaaatatatcgATTTATTCAAGcctaataaatggatttaaaaatacatacactcTTACGTATGTTGGTGGGAAAAGACTGCTTCTATTgtatgaatgtgctgttatgtgTCAGTAAATTGATTTACTCAAAGGTATTCTTTATAATAATACctgtaataatatgtatgtgataatgtaataatataagaCCATTTGAAGACCTTTAGGATATAATGTGTAGTTTGAGTActgcttcatttaaaatatatcataaaATGTTAATGGAAATATCACAATATGCACTGACCATCCTGTTTAATATGAACACCTACAGTATATGttcacctgttcattcatgcagttatcctgcttttttcccaatcttcaactgtccagtttgggtgagcctgttgCCGCTTGACATGTTgtttgttctgagatgcttttctgttcaccacggttgtaaagagtggttatttgagttaccatcaCCTTCCTGGCAtctcgaaccagtctgaccatcaactcttctcatcaacaaggcttttcaAGCTGCAGTACTGCCACGCACTAgacatttttggtttgttttttttgcacctttgTGTGCATactctagagactgtcgtgCATGAAAATctatcagtttctgaaatactcgaatcagtctgtctggcaccaacaaacaaagtcactgagatcatacagtatttttctctcattctgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219189 lncRNA upstream 11404 20705994 ~ 20708027 (+) True G185206
TU219165 lncRNA upstream 151139 20568076 ~ 20568292 (+) True G185182
TU219046 lncRNA upstream 164307 20554856 ~ 20555124 (+) True G185092
TU219010 lncRNA upstream 212751 20506477 ~ 20506680 (+) True G185063
TU218982 lncRNA upstream 282844 20435795 ~ 20436587 (+) True G185037
TU219346 lncRNA downstream 168441 20890247 ~ 20896461 (+) True G185330
TU219404 lncRNA downstream 242729 20964535 ~ 20967901 (+) True G185381
TU219446 lncRNA downstream 281022 21002828 ~ 21024560 (+) True G185418
TU219472 lncRNA downstream 337258 21059064 ~ 21060228 (+) True G185436
TU219486 lncRNA downstream 355369 21077175 ~ 21084699 (+) False G185439
XM_034308874.1 mRNA upstream 1529 20716531 ~ 20717902 (+) True sid1
XM_026919781.2 mRNA upstream 155499 20548259 ~ 20563932 (+) True tmem259
XM_026922496.2 mRNA upstream 538189 20171890 ~ 20181242 (+) True slc1a8a
XM_026920083.2 mRNA upstream 549023 20163215 ~ 20170408 (+) True LOC113530255
XM_026920096.2 mRNA upstream 556386 20153984 ~ 20163045 (+) True sgta
XM_034308487.1 mRNA downstream 84525 20806331 ~ 20839589 (+) False mast3b
XM_034308489.1 mRNA downstream 84525 20806331 ~ 20839589 (+) False mast3b
XM_034308490.1 mRNA downstream 84525 20806331 ~ 20839589 (+) False mast3b
XM_034308491.1 mRNA downstream 84526 20806332 ~ 20839589 (+) False mast3b
XM_034308488.1 mRNA downstream 84719 20806525 ~ 20839589 (+) False mast3b
TU218923 other upstream 568537 20149971 ~ 20150894 (+) True G184979
XR_003403385.2 other upstream 847968 19865798 ~ 19871463 (+) True ccl44
XR_004579107.1 other upstream 885017 19827986 ~ 19834414 (+) False tax1bp3
TU218602 other upstream 1019157 19695244 ~ 19700274 (+) True rps15
TU218486 other upstream 1165909 19550382 ~ 19553522 (+) False si:ch73-40i7.5
XR_004579103.1 other downstream 467980 21189786 ~ 21210539 (+) False wipf2a
trnap-agg_1 other downstream 1237082 21958888 ~ 21958959 (+) True trnap-agg_1
trnaq-uug_2 other downstream 3211060 23932866 ~ 23932937 (+) True trnaq-uug_2
trnaq-cug_11 other downstream 3212326 23934132 ~ 23934203 (+) True trnaq-cug_11
trnaq-uug_3 other downstream 3212829 23934635 ~ 23934706 (+) True trnaq-uug_3

Expression Profile