RNA id: XM_034308869.1


Basic Information

Item Value
RNA id XM_034308869.1
length 7358
RNA type mRNA
GC content 0.48
exon number 43
gene id LOC113536476
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 3283110 ~ 3352779 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTACTACCGGCGCATGCGCAGTTTAGCCTTTATACCAAACGGGCGCTTTGGGGCGGAGATGAACAGCTCTGCTTGCTGCAGAAAATATCTGCTAATCAACAAACCCAGTGATGCTCAGTGCAGAGGACTGACATGGCAGttttCCTCAGAGGACTGTGAGTCGATCTGCGGGAGAATGCGGGAACCGACGTCACATTCGTTCTCCATCACAGACGAATCCCCGAAGTCTTTCCGTTACCAGTGTTTGAACTATTTGCTGTAATCGCTCTGAGCTCACATATGGTGCCCACGTGCCACTGGACTGTAAATAAAGGGAGAACCTTTTTGCAATAAAGTGCCGTTTTTGCACATCGCTATTACTGATCACTGCGTCTGGTTGCGTTTTTTTATGCGAGTTTTGGTCTATAACTGGTTCGATCTTAAGGAAACATGGAGGCCAATATGGAATATATTGTGGGACAGGTGATGCAGAAAGACTTGGGACGGCGACTCCAGGTCGGACAGGAGATCATAGACTACATTCTGGATAGGCAGAAGTCACATGACCTGGAGCAGGATCAGACCATGCTGGACAGGATGGTGGACGGCCTGGCTACTTCATGGGTCAACTCGAGCAACTTCAAgGTGGCTCTTCTGGGAATGGACATTGTGTCTGCTTTAGTGACCAGATTACAAAATCGCTTTAAACCCCAAATTGGTACAGTCCTGCCCAGTTTAACAGACCGTTTAGGTGATGCCAAAGACCAAGTGAGAGACCAAGCCCAGGCTCTGCTGTTAAAAATAATGGATCAAGCTGCCAATCCACAGTACGTATGGGATCGAATGTTGGGAGGATTCAAACACAAGAACAACAGGACTAGAGAGGCTGTCTGTTTTTGCCTTATTTCCACACTAAATATATATGGAGCCCAGGGTTTAACTCTGAGCAAGATTGTTCCTCACATATGCAGTCTGTTAGGAGACCCCACAAGTCAGGTTCGAGATGGAGCTATGAACTGTCTTGTGGAGATTTACAGACATGTTGGAGAAAGAGTGCGAATGGATCTCGGGAAAAAAGGCTTGCCACAATCACGgttgaATGTCATTTTTAGCAAATTTGACGAAGTACAGCGATCAGGGAATATGGTGCTGTCTGCAGataaGAACATAGATGATGACGACTCTGTGGATGGAGGCCGTTCCTCCGCCTCCTCTAAAGGAGCAGCGTCTGTCCGCCGAACAGGATCCACGCGCAGGCCAAGCTCCGCCTCCAGCACCAAGAGCACAGGAAAAGAGGTGTCAGGTGCTGGTGCTGTGGATGAGGAAGACTTCATCCGTGCCTTTGAGGATGTGCCCACCGTACAGATTTACTCCAGCAGAGAGCTCGAGGAGtccataaataaaatcagagagGTCCTCTCAGATGAAAAACAAGACTGGGAGCACAGAGTGGCCGCGctGAAGAAGGTGCGTTCGCTGCTGCTCGCCGGGGCCACTGATCACGAAGCGTTCCTCCAACAACTGCGGCAGCTGGAAGGAGCGTTTAAGCTCTCCGCTAAAGACCTGCGCTCTCAGGTTGTCCGTGAGGCCTGCATCACGCTGGGGCATCTGTCGTCTGTGCTGGGTAACAAGTTTGACCATGGAGCCGAGTCCATCATGCCCACGTTGCTCAATCTCGTCCCCAACAGCGCTAAAGTGATGGCTACATCCGGCGTCGCAGCCATCCGCCTTATTATACGAcacacacactatCCTCGGCTTATCCCCATCATTACCAGTAACTGTACGTCCAAATCCGTGGCTGTCCGGCGACGCTGTTATGAGTTTTTAGACCTTTTACTCCAGGAGTGGCAGACGAGCTGTCTGGACAGACATGTACCTGTTCTGATGGAGACCATTAAGAAAGGAGTCCACGATGCAGACTCAGAAGCCAGATCGGTTGCCAGAAAgtgttaTTGGGGATTCCACGGCCACTTCAGTAAGGAGGCGGAGCAACTGTTTCAGGCTCTCGAGCTGACCTATCAGAAGGCTCTGCAGTTGCATCTGAAGAGCTCGGACAGTATTATGTCTCTCCCCCAATCCGATCGCTCCTCTTCCAGCTCTCAAGAGAGCCTCAAtcgTCCACAGTCTGCTAAAGCACCCGTAGGAAGCAGTGTAACCAGAAATAAAGTGGTGAGCTCTAGAGTGTCCTCTACCCCTGGCTCACTGCAGCGATCACGCAGCGATGTCGACGTCAACGCCGCCGCCACCGCCAAGTCTCGAATGCCCAAAGTACCTGCTGCTGCTCCGTTCAGCTCGGCCGGTGCACTGCCGCCTGGCTCCTACGCCTCGCTAGATGCAACTCCTGGTAATGTGGAGGGTCGTGTGCGCACACGGAGACAGAGTTCAGGCAGCAGCGTTGGAGGCGGAGCCTCTGTTACAGACAAGGGGCGGAGCCGAGCAAAAGTGGTGTCGCAATCACAACctgggaGTCGTTCCAGTTCTCCAGGGAAGCTTATTGGTCAGTCCCATGGCAAAATGTCCTCTGTGACCCCAGCAGAGAAGCGCACTAGGATCCCACGCAGTCAGGGCTGCAGCCGAGAGAGCAGCCCCGGTCGCTCTGGCCAGGCGCGGGGTAGTCGCATCCCGCGGCCCAGTATGAGTCAGGGGTGCAGTCGTGACACAAGCAGGGAGAGCAGCAGAGACACAAGTCCTGCACGGGGTTTTACTCCCCttgTGTCTCGGCGCCACTCGCGCTCCACCAGTGCCCTGACAGGCGGCGACGTGCTGCAAACAGaTCGTTTTGGGCTGATCCATCAGGCGCGGATCTCTGCCTCGGTCAACGCCATGCGCATCCTGAACACAGGCATGGAGGTGGAGGCAGCTGTCGCTGATGCTCTGCTATTAGGAGACTCCAGGAATaagCGGAGGCCCATGCGGCGCTGGTACGAGTCTGCTGGCATGTACTCGGACGATGACGCCAACAGCGACGCCTCCAGCGCCTGTTCggagctttcctatagctcgCGTAACGGAGGAGTGCCGCACTACATGCGTCAGACAGAGGACGTAGCCGAGATCCTAAACCACTGCGCCAGTTCCAACTGGTCCGAGAGGAAAGAAGGCCTGCTGGGCCTCCAGAACCTTCTGAAGAGCCAAAGAACCCTCAGccgTGTGGAGCTCAAGAGGCTGTGTGAGATTTTCACTAGGATGTTTGCCGACCCTCACAGCAAGAGAGTGTTCAGCATGTTCCTGGAAACGCTGGTGGACTTCATCGTGCTGCACAGGGAGGATTTGCAGGACTGGCTCTTTGTGCTCCTCACACAGCTGTTAAAGAAGATGGGCGCTGATCTGCTGGGCTCAGTGCAGGCCAAAGTGCAGAAAGCTCTCGATGTCACCAGGGATTCTTTTCCCTACGATCAGCAGTTCAACATCTTAATGCGCTTCATTGTCGATCAGACACAAACCCCAAACCTCAAGGTGAAGGTGGCCATTCTGAAGTATATCGAGTCTCTGGCCAGACAAATGGATCCCACTGATTTTGTGAACTCCAGTGAGACGCGACTTGCCGTCTCCCGCATCATCACCTGGACGACGGAACCCAAGAGCTCAGATGTCAGAAAGGCTGCTCAGATGGTGCTGATCTCCCTGTTCGAGCTGAACACACCAGAGTTCACAATGCTGCTGGGAGCGCTGCCTAAAACCTTCCAGGATGGAGCCACCAAACTCCTGCATAATCACCTGAAGAACTCCAGCAATGCTGCCGCCACGagtTCACCAAGCAACACAGTTGGCCGCACACCTCCAAGACTCTCTGGTTCCCGCACCAGTCCCCTGACGTCCCCTACCAACTGCTCTCATGGAGGCCTCTCACCCAGCATGCTGGAATACGACACAGAGAACATGAACTCAGAGGAGATCTACAGCTCTCTGAGAGGAGTCACTGAAGCCATTCAGAGCTTCAGCTTCCGCAGCCAGGAGGACAGCTACGAGCCAATCAAACGCGACACCAAGAAAGACGACGCGAGTGCCGTAGCGTCCTCTGCTGCAGACCCCCGGCTAGGTACAGACATGATGGAGGGGGGCCGAACGGCTCTGGACAACAAGACCTCGTTACTGAACACACCGTCCCCTCGCTCTTTCCTGGGGCCGAGGACGCGCGAGTACAATCCCTACAACTACACCGACTCCATCAGCACTTATGATAAAGCCGCTCTGAAGGAGGCAGTGTTCGATGATGATGTGGAACAGCTCCGTGATGGTCGTCGTCAAGAGTTTGGTGAAAACAAAATCACGGCTCCCAAAAGTTATTCTGCATGCCCTGCGCAGCACATGGAGCTGGTTGGTGACCTCCTGAAGGAGCTGTCCAATCACAGCGAGCGTGTGGAGGAGAGGCGGGCCGCCCTGTTGGAGCTGTTGAAGGTGACCCGCGATGACAGCGTAGCTGTATGGGAGGAGCATTTTAAAaccatgctgctgctgctccttgAGACACTGGGGGACAAAGATCACACCATCCGGGCACTGGCTTTGCGTGTTCTGAAAGAGATCCTGCGAAGTCAACCTGCACGCTTCAGGAACTATGCAGAACTGACCATTATGAAAACACTGGAGGCACACAGAGACTCCCACAAAGAGGTGGTGCGTGCTGCAGAGGAGGCCGCCTCCACCCTGGCTTCCTCCATCCACCCGGAGCAGTGCATTAAGGTGCTGTGTCCCATCATACAGACTGCAGACTACCCCATCGACCTGGCCGCCATTAAAATGCAGACCAAAGTCATCGAGCGCATTCCAGAGGAGTCCCTTTATCAGCTGCTGCCTGATATCATCCCCGGCCTGCTACAGgGATACGATAACACTGAGAGCAGCGTGCGGAAAGCCAGTGTCTTCTGCCTTGTGGCAATTTATTCTGTGATTGGAGAAGGGTTGAAGCCTCATCTTGCCCAACTGACGGGCAGCAAGATGAAACTGCTGAACCTCTACATCAAGCGAGCCCAAACTaccaacagcaacagcagcagctcctcTGACATCTCCTCCCACAGCTAAACCAACCAATCACTTTCTAAACCAATCATAACCTCACGCCCAGTCCGGTTTTACTGAAACAACTCGAAAAACCCAACCCACAATCCGAGGTCTTCTTTTAATTAAAGGACaatgatttttatttgaatCCTTAGACCCAAAACAACAATCTTATTATATAACAAGACCTGTGTTTAGAAATGGGACTCTGGTTTTGGGTCCATGTTCCAGTATGTGTGAAATGGGTCGCTTGTATTGCCGTActcctgaatgtgtgtgtaatgtatcaGGCATTAACGAGAGCAATTGTGCCTCAGTCCAGTGGAcctgtttgtctgtgttctcTTATAGGGCAATCTATTTCTATTGAAGGAGTACtcttgcgttttttttttttaatctctcattACTACATCTGCACCGTATGCGTAATGACCATGGACAACAATTTAGAAAATTGCCctttactgagaaaagaacagaaaacctgttcaTATATTACTTGCTTAAAATGAAAGACTAGgggcagtcttttttttttttgcatacaaatgttttGAACACTTTTATGAATTTACAAGTCAAAAGATTTTAAgctctaaatctgtataattcagCCTTTCAGAAACAGGACTAGTTTTTGTGAAGGAAGAATTTGTTGGTGTGATGTAGTCACTGTAACTCTAGGGAAACATGGAAGTGCTCCAGTTTCTGCCTGATGGCACAAAAATGTATGTGAAGTATcgaaagtattttttttaactgtatggCTTCACTGTTGGAACGTTGGGTAACACTACATaagaacatttttgttaaaatgtttatttctgtacTATCCTAACATGTTCATTGTTAGAGTCTACTGTTTGGAGTTTTGAATTCCTGTTATATAGACTTCTTAAGCATTAATTCACTGCACCAAGATCTGCCCTTAGATTTCTATTATAAGTCTAAAGTTTTCTCAGTACATGCAAATGTATAGGAaaactttggtgcttggacccctaccAAGAAAAAGTCTGCTGTGATTACACATACGCTACAGATTTGGTGTATAAAGATTAGATTGAAAAATTCTGGAGTATTCCTTGAAGcccttttttaaaacatcattcagtcagTGCACAGGCAAAACTATTTCCTGTACCtggttacattttaaaattaagtaATGACATTCTTGATTGGCTAAAGaaaactgaccaatcagctgCTGTATTATTGTTAGCTTGCGTCAACTATTCAGCGAAGGACGTTTTAGTAAATGTCAGGACTAGTTGAACATTCATTCCTGTGTAGGTGTAGTAATAGACCTCTTTATCACTGCTGCCTCGAATTTCTGGAAAATTCTGTTGCATGTCAATCATTTGGACCTATGGAAAATTCTCTTTTTGGGggcatttaatgttaaatatgcAAGAACAGAGATTGTATTTGTACAGTGATGGTCCTTTTGTCCAttaagaagggaaaaaagatgAAGGATAAATTTATCCCTGGTTCattctgtaaaaaaacaaacaaacacatgtaTAGAAGATTTGACTGAGCATTTCCTGTTATACCTGAATTTGCTTGACGATCATTTGCCTAGTTCAGTGACTTCCATGAAGAAGCCTGCttagaataataaagaaattttaTTGCCTTTGGGTTTGATTTTGAagaaaaagatatttaaaaggACTGTGGATGTCAGATATGCTCGATTTGAAGCAAACTTCTTTATCCGTGAACTTTGATCTTAATGATGTTCATAGACTCAAAGAAAACTTTCAGCTAAAATATTCAACTGAGCTTAAAATGCATTTGGCCATTTTCAGATTAAACTAGTGCTAGAAATGAAACTTGTATTCGCTCCAATACTATATGTTTAGTGCAAATCTAAATTTTTTAGAGCAATAATTCTAAACTGATCCAAATTGGATTTACTTTTAGCCAAACCACTTATCCAATTTTATGGTTGTGGGAAAGTCTGTGCCTGTATGGCCTTTTAAAGTTCTTCCTTACACAAAGCTGCTGTTAACTGAACCCTGGCTCTTTAGATATCACACTTTGTGCTCTTGAATGCTGAATGTTGACAGTGTGTTGATTTGTTACCTAACTATTAGGCAATGTAGTAATGTTCATAAAACATTTTCggtatgtttttggaaaatgtaaagCCGCCTCAGTTGTACAGCTGGGGACTGAAGAGGTCTCCCCAGCAAGGGAACTCACGGGATTGTAAAAAATTGACAACAATTTGCCCTGGATGTGTATTCTGTCTTTGTGTTAGTATGAAACCGGAGGAAAAAGGTGTTCGGTCATCCAGGTTACGTCTAATGTCATGCAGTAGTAAGTTCGAGCAACtggacatgattttttta

Function

GO: NA

KEGG:

id description
K16578 CLASP1_2; CLIP-associating protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207417 lncRNA upstream 44896 3237884 ~ 3238214 (+) True G175291
TU207412 lncRNA upstream 63770 3219008 ~ 3219340 (+) True G175287
TU207410 lncRNA upstream 63851 3219008 ~ 3219259 (+) False G175287
TU207407 lncRNA upstream 70199 3212495 ~ 3212911 (+) True G175284
TU207386 lncRNA upstream 102556 3178782 ~ 3180554 (+) True G175263
TU207518 lncRNA downstream 33411 3386190 ~ 3386375 (+) True G175370
XR_004579094.1 lncRNA downstream 79550 3432329 ~ 3434701 (+) True LOC117598422
TU207537 lncRNA downstream 95163 3447942 ~ 3452820 (+) True G175389
TU207662 lncRNA downstream 227199 3579978 ~ 3581939 (+) True G175493
TU207689 lncRNA downstream 252383 3605162 ~ 3608844 (+) True G175517
XM_026930336.2 mRNA upstream 19812 3254156 ~ 3263298 (+) True znf143a
XM_034308873.1 mRNA upstream 19812 3254156 ~ 3263298 (+) False znf143a
XM_026930803.2 mRNA upstream 49170 3226648 ~ 3233940 (+) True psmd7
XM_026930721.2 mRNA upstream 311418 2799396 ~ 2971692 (+) False LOC113536638
XM_026930488.2 mRNA downstream 212335 3565114 ~ 3572263 (+) False LOC113536513
XM_026930487.2 mRNA downstream 212336 3565115 ~ 3572263 (+) True LOC113536513
XM_026930490.2 mRNA downstream 212373 3565152 ~ 3572263 (+) False LOC113536513
XM_026930489.2 mRNA downstream 212374 3565153 ~ 3572263 (+) False LOC113536513
XM_026930845.2 mRNA downstream 293199 3645978 ~ 3647115 (+) True pth1b
TU206600 other upstream 1204483 2078077 ~ 2078627 (+) True G174546
TU206587 other upstream 1222827 2058970 ~ 2060283 (+) True G174536
TU205870 other upstream 1918179 1361782 ~ 1364931 (+) True G173898
TU205778 other upstream 2540400 742021 ~ 742710 (+) True G173819
TU205686 other upstream 2712784 568813 ~ 570326 (+) True G173748
TU207714 other downstream 294591 3647370 ~ 3658276 (+) False btbd10b
XR_004579071.1 other downstream 928465 4281244 ~ 4297247 (+) False nadsyn1
TU208265 other downstream 1303826 4656605 ~ 4661136 (+) True G175977
XR_003403680.2 other downstream 3769606 7122385 ~ 7131506 (+) False LOC113536390
TU209855 other downstream 3915105 7267884 ~ 7271320 (+) False rpl37a

Expression Profile