RNA id: XM_034308883.1


Basic Information

Item Value
RNA id XM_034308883.1
length 2407
RNA type mRNA
GC content 0.51
exon number 13
gene id LOC113536571
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 1006805 ~ 1024473 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atgattatattatttatattgtcaCGTCTTCGAGCACTAAAATGGAGGCATCTGTGTCTTTTCTTCTATGTTGCAGGTGGACTCGATGGTTATGAAATCCTCAAGCTGCATGACGCTGATCCGTTCCTGGGAGTGGAGCTGAAGTTCATGGACGTCATTCCCTGTAGGCGTTTCCTGGACAGCTACATGTGCGGCTCGCTGCTTCAGAGCCTTTCCCAGCATGCATCACGCCTGCTCTCGCTTCCCGACAGTGTGGGCGTGGAGACCATGCTGaaggcaggaacacacaccCTGGACCACAGCCTCCGAGATCTAGAACTCTGTCTACAGCTCATATACCAGTCTCAgCCCGTGCGTTTGCGGGATGACGAGGTCACGCAGCTCGAGCAGCAGCTACAGAACAGCTACATTCCCCCCGTCCAGAAGGAAGTGCCCAAGAACTGCTTCCTGTTCCAGAAACGGCTGTTCGACGACAGGCCTCTGACGGCCGCGGATCAGCAGCGCTTCGCTTCTCACGTGGGCCGCGACTGGAAGCGAGTGGGTCGGGCGTTACAGAAGAACTGCCGGGCGCTGAAGGGGGCGGCCATCGACAATCTCGCCTACGAGTATGAGAGGGAGGGGCTTTACGAACAGGCCTATCAGCTACTCGGACGCTTCATCCAATCAGAGGGCAGGAACGCCAGGCTGGGGCGTCTCATCAGCGCGCTGGAGGAAGCCAAGCTGATCAGCATGGCCGAGATCATGTTGGACATTCAGCCCCGAGAggcatttctgcagcacaaTCGAGCGACGTgtctgattcacttcctgcagcgagtcgattcagagtcgaatcactttctgACTCTGAATCGGATCGACAGCACCTCGCTCAGACGCTCTCGGACCCGAGTGTGTTCTCAGCTGACTAAAGAACCGCAGCGAggaggagaacacaccaggCGGGTGCGGGAGCGGGTGCGGGAGCGGGTGCGGGGGGGTGGGCACGCGGGAGGACGGGAATTTCGGATACCGCTCAGTCGCACGCGCCTCGCCATGGGATGCTCGTTAAGCGCGGAGGAGCGCGAGGCTCTGGACCGGAGCAAAGCCATCGAGAAGAACCTGAAGGAGGACGGAATCAATGAAGCGAAAGTAGTGAAACTGCTGCTGCTcggtggAGGAGAATCTGGGAAGAGCACTATTGTCAAACAGATGAAGATTATCCACGAAGATGGTTTCAGTGGAGACGATTTAAAGCAGTTTAAACCCATCGTCTATAGCAACACCATTCAGAGTCTGTTCTCCATTTTAAAAGCAATGGAGAACCTTGGCATCGAGTATGAAGACAAGGGCAGGgctTCTGATGGAAAGTTAGTCTGTGACATAATCAGCCGTATGGAGGACACGGAGCCGTACACACCTGAAGTTCTGGTGGCCATGAAGCGTCTGTGGAAAGATGGAGGAGTTCAGGCCTGCTTCAATCGATCACGAGAATATCAGCTCAATGACTCCGCTCAATaTTACCTGGACAGTTTGGACCGAATCGGATCACCTGATTATCTGCCCACTGAGCAGGACATTCTGAGGTCGCGGGTTAAAACCACCGGAATCGTGGAGACACACTTCAGCTTCAAGAACCTGAACTTCAGGCTGTTCGATGTAGGAGGTCAGAgatcagagaggaaaaaatggaTCCACTGCTTCGAAGGTGTGACGGCTATAATCTTCTGTGTAGCGATGAGCGGCTACGACCAAATGTTACATGAAGATGAGACGacgAATCGTATGCACGAGTCCCTCATGCTCTTCGACTCCATCTGTAATAATAAGTTCTTTGTCGACACTTccatcatcctcttcctcaACAAGAAGGATCTTTTTGGGGAGAAGATAAAGAAATCTCCGCTGACGATGTGCTTCCCGGAgtatacagGTCCGAACACGTATGACGACGCGTCTGCGTATATTCAGGTTCAGTTTGAGAGTAAAAACCGTTCTCCTAATAAAGAGATTTACTGCCATCAGACGTGTGCGACTGACACGGGAAACATTCAGGTGGTGTTCGACGCCgtcactgacatcatcatcgCCAACAACCTGCGTGGCTGTGGCCTGTACTGAGCTGTACTGAGCTTATTGTCATCAAAATCATTGTTTCTCGTCATAGTAACGAGCGACTGAACTGAAACTCCGCCCCTTTGACCAACATTATGTCATAATACTTCATCCTGTTTTTGTCGTTTGTCTGGTTTTCTTTATAATCCTGAGTTAAAACGGGCactgtgtgtgagcgtgtgtgtgagcgtgtgtgtgtttgtgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgagtgtaggATAATTAGTGTACGGCTAAATCTGGAAAATTTGCGGGacacataacaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0007212 dopamine receptor signaling pathway biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0003924 GTPase activity molecular_function
GO:0031821 G protein-coupled serotonin receptor binding molecular_function
GO:0005525 GTP binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function

KEGG:

id description
K19860 GPA1; guanine nucleotide-binding protein alpha-1 subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205819 lncRNA upstream 96488 909639 ~ 910317 (+) True G173854
TU205786 lncRNA upstream 184122 815913 ~ 822683 (+) False ccdc102a
TU205783 lncRNA upstream 186665 764340 ~ 820140 (+) False G173823
TU205782 lncRNA upstream 186665 798053 ~ 820140 (+) True G173823
TU205780 lncRNA upstream 216548 762204 ~ 790257 (+) True G173821
TU205830 lncRNA downstream 14 1024487 ~ 1025616 (+) True G173865
TU205849 lncRNA downstream 109545 1134018 ~ 1134612 (+) True G173880
TU205864 lncRNA downstream 352731 1377204 ~ 1432962 (+) True G173893
TU206003 lncRNA downstream 593760 1618233 ~ 1618745 (+) True G174018
TU206008 lncRNA downstream 604371 1628844 ~ 1629199 (+) True G174023
XM_034308729.1 mRNA upstream 7590 988193 ~ 999215 (+) True ogfod1
XM_034308730.1 mRNA upstream 9474 988193 ~ 997331 (+) False ogfod1
XM_026930386.2 mRNA upstream 19422 977243 ~ 987383 (+) True acd
XM_034308732.1 mRNA upstream 30446 965975 ~ 976359 (+) True vrk3
XM_026930863.2 mRNA upstream 41417 961369 ~ 965388 (+) True LOC113536732
XM_026930713.2 mRNA downstream 10087 1034560 ~ 1043087 (+) True LOC113536635
XM_026930285.2 mRNA downstream 24794 1049267 ~ 1058585 (+) True fbxo22
XM_034308744.1 mRNA downstream 39608 1064081 ~ 1130990 (+) True herc1
XM_034308822.1 mRNA downstream 126308 1150781 ~ 1151756 (+) True exosc6
XM_034308642.1 mRNA downstream 633659 1658132 ~ 1667262 (+) True nucb2a
TU205778 other upstream 264095 742021 ~ 742710 (+) True G173819
TU205686 other upstream 436479 568813 ~ 570326 (+) True G173748
TU205870 other downstream 337309 1361782 ~ 1364931 (+) True G173898
TU206587 other downstream 1034497 2058970 ~ 2060283 (+) True G174536
TU206600 other downstream 1053604 2078077 ~ 2078627 (+) True G174546
TU207714 other downstream 2622897 3647370 ~ 3658276 (+) False btbd10b
XR_004579071.1 other downstream 3256771 4281244 ~ 4297247 (+) False nadsyn1

Expression Profile