RNA id: XM_034308887.1


Basic Information

Item Value
RNA id XM_034308887.1
length 2034
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC117598427
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 13277958 ~ 13280512 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAACTATGCTGGCAGAGAAAGAATAGCTCTTAAAATTTGTATTCCCACAGCTTCTACACGGAACCTTTGGGCATACTTTGCCTCATGATATATCACATGGTCATATATCTATGTTCGTAagtacacttttctgttgtgttttcagttATTGCTGTGCATCGTTCAGAGTGCCAGACCTTCATGCAGGAGAACATCTGAACTGGTATGCTTGGGGGACTATGGATGGTGTTATTGCTGAGGCTGCTTCTGGTGACCTACAAAACACCTGTGCATCACGATCCCACTTCAATCAGCATATAACCATCAAGCTGGACCTGTTCCATTGCATGAGGTGCTTcctctgtgagtgtgtttcagAGCATCACACCCTATACAGTTCCTTCACCCAATTCTTATCTGCCACTTTCTGTGTGGTAGATCAGAAGGACCTGCAGAAGCTCAATAATGCATATGCATTTTGTGGGATTCAGCCTGCCAACCCCACCAAGCAGCAAGAGGGTTGAAGGAGTTATGCAGCACTTCCATTTGGCATCTGATCCAAATGGCGTCTCCCTGTACAAACCCTCTATACTGAAGGCATGGGGCATGGTGGCTGGTGAGATCCTGTACAGGCATGGTGGAACACTGCAGCTTAATCATGTCCAGGGTGAGGGGGCTAAAGTTGATGTCTGGATCCCAATAAGAGGAACATCTCAGCAGGAGGGCTACCATTTCCACCAGACTCAGTGGGTCACTGGCACACGTGTTTCCTCAGAGCTGTTTCAAGCCCAGGGCATGACCGGAGTGGCACACTGGAACTTTCATCATCTGGTGGACCTGAAAATGCCAGATGTTTGGCTTCCTGAATCCACTGGTACACTGACTGTGTCCTTGCTGTCCTCATTTCTTGGTGCCCATGTGGAGCATCAGTCAGAGCCAGAATCCACTGGCATGCTGCCTGTGCCCTCGCTGTCCTCACCTCATGGTGCCCATGTGAAGCCTCAGTCAGAACTAGGAACCTCATATACACCACCTCTGCCCATGGTGGCCTCACCTGCGAGCACCTGCACTGGACCTGTGAAGACTGGTGGGAAGGCATTTGTGCTGGACCACAAATGGTGGACAGCCCCAATGAAAGAGGCCATTGACGTCTTGCTGAATAAGCATCATGGGAAGAAGGACATGCTAAAGTTTGTGAATCAGGAGTACACAGCAGTGGCCCAGAACTCCTGTACTGATCTCAATAGCATGCTCCATCCAACCACAAGATTGCACATTGCACAGTACGTCAAGCACTTGGCCAAACTGCTAAACATCAGTTCGTCTTTAAATACAAGTCCAGAGAAACTAATTGAGGGACAGCAACTCTGGCACTCACTGACAGAGGGGAGTGAAACTACCAGTGTCCCAGTGGTAACAATGCCCCCTGCAGTTTTAAACCCACCAACATCTGCTCTGACCACACCCCTGACTCAAGAGACCATTGAGAGAATTGTCGAGAGCATCATGGAGAGGCAACAACAGccaaagcagaagaagaagcagacaAAGACTTGTCTTGCTTGTGGACAGCCAAAGTCTCACTATGAGAGTGATGGCTGTTttatccactttttttttataagcaaGGCCCTGTCAGGTACTTCTACTGTTCCACAAAGGTTTTTAAAGCTTACGGTGGTGAAGGACTTACAAACCCCAGAATACCATTTCAAAACTTCATGGAAACAGAGTTCTTTCAGCGAGAACTTGAGGCCACAAAGAAACAAGTGGAAGAGAAAATACAGCAGAAACGCACAAGGCCTGATTCTCAACACATTGGTCGCTTGTGTAGATTTTGTAAAATGGAACTTAAGCAGGGCCCAAACAGtccacacatatatacacaggcTTTCCTGGAGTTGCAGAGAAATATGTTTATTGTCTTGCCAAAGTCTTTTCCATTTACAATCATCAGGGAATGGAAAGAGTTGACCTGGAAAGAGTTTCAGAAGTCTGCTTTTTATGAGATggaaagacagatggatggcagaaaaaagaaaatgaagaaaaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213946 lncRNA upstream 38375 13236477 ~ 13239583 (+) False aqp12
TU213871 lncRNA upstream 74810 13136137 ~ 13203148 (+) True G180695
TU213678 lncRNA upstream 426779 12850960 ~ 12851179 (+) True G180534
TU213659 lncRNA upstream 436676 12836868 ~ 12841282 (+) True G180516
TU213315 lncRNA upstream 595395 12654422 ~ 12682563 (+) True G180268
TU214029 lncRNA downstream 18768 13299280 ~ 13302297 (+) True G180833
TU214035 lncRNA downstream 121375 13401887 ~ 13406255 (+) True G180838
TU214147 lncRNA downstream 167433 13447945 ~ 13448184 (+) True G180926
TU214166 lncRNA downstream 349183 13629695 ~ 13640963 (+) True G180945
TU214388 lncRNA downstream 817148 14097660 ~ 14100987 (+) True G181136
XM_026930329.2 mRNA upstream 38321 13236998 ~ 13239637 (+) True aqp12
XM_034308898.1 mRNA upstream 166252 13096712 ~ 13111706 (+) True ankmy1
XM_026930730.2 mRNA upstream 182995 13088273 ~ 13094963 (+) True hsh2d
XM_026930729.2 mRNA upstream 182995 13088274 ~ 13094963 (+) False hsh2d
XM_034308546.1 mRNA upstream 183568 13088273 ~ 13094390 (+) False hsh2d
XM_026927676.2 mRNA downstream 27929 13308441 ~ 13313447 (+) False cep19
XM_026927683.2 mRNA downstream 28159 13308671 ~ 13313447 (+) True cep19
XM_034308910.1 mRNA downstream 28336 13308848 ~ 13313447 (+) False cep19
XM_034308819.1 mRNA downstream 39431 13319943 ~ 13368258 (+) True impact
XM_026923575.2 mRNA downstream 99284 13379796 ~ 13397775 (+) True LOC113532271
trnag-gcc_17 other upstream 2402 13275486 ~ 13275556 (+) True trnag-gcc_17
trnag-gcc_16 other upstream 4341 13273548 ~ 13273617 (+) True trnag-gcc_16
trnag-gcc_15 other upstream 8229 13269656 ~ 13269729 (+) True trnag-gcc_15
trnag-gcc_14 other upstream 10181 13267707 ~ 13267777 (+) True trnag-gcc_14
trnag-gcc_13 other upstream 12123 13265764 ~ 13265835 (+) True trnag-gcc_13
TU214031 other downstream 20743 13301255 ~ 13305716 (+) True G180834
TU214157 other downstream 215078 13495590 ~ 13495985 (+) True G180936
TU214440 other downstream 884514 14165026 ~ 14174218 (+) True G181175
TU214656 other downstream 1281178 14561690 ~ 14562966 (+) False LOC113540185
TU214729 other downstream 1309407 14589919 ~ 14594615 (+) False ankrd29

Expression Profile