RNA id: XM_034308888.1


Basic Information

Item Value
RNA id XM_034308888.1
length 3126
RNA type mRNA
GC content 0.47
exon number 19
gene id LOC117598428
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 5549431 ~ 5562727 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGCCTTTCCTAAGAAAACTCTGCATTTATTGTTGGATTTCAGGGACTTTTCTCTTATCCGCACATGTCGTGTCCCTGAAGACGTCTCGAGATGTATCGGATGACCAAAATTCCAACAAAGCCGTTTTTCGGGACGTGGTGTATGAATTTGTCGCAAAGCCACACTCATGGGGACAGGCGAGTGAAGCCTGCGAGATTCGAGAAGGGAAACTTCTGAAGTATCTGGACTGTGAAATCAAGGATTTCTTTTCCAAAGTGTTCAAGGACCTCCAGACCGCGGCTCCAGGCTGGTGGATCAGTGAGGGTTTGACGGGATATTATGAAGAATGTGTTATTCAGGCAATGCCCACTGCTCAACCTGCTGATAGACCTAGTCCACATTTTTGCACCTACGTGACAATGGATCCATTCCAGCTGGTGACCACGCCCTACTGCAATATGACCTTGGGTTACCTGTGTActcaggATTCACAagcagatgaagatgaaaataaaCGAGTGCAGAGGAGCATTCGGGTCCGGAGGAGCACAAATCCCATAAtaAGTGAATGGTTACAGCAAATGGATTCATCAACATCAGACTTGGTAGCTGTCCTCACgAAGCTATACCTAAATGATATACTAAAAGCCCTAAAGGCGCTTAGGGAAATAGATGACTCTAGGAAGGACCTCACTATTAATTGTACTGGAGGCCTCATTTTGCACACCGTCGAGCAGTGTGAACCAGATGACAGCCCAGAGCATCTTGAGGAGCTGCTTATTCTGGCTACCTTGATTTATCAGCAGTTAAATATACTGACACAGCAAAACACCAACACAGTATACGTCTGGGATTTTTTATCAGGCACGCTTTTTACAACCAGacAGGAGCCAAAAAATCTGGACACCATGGTGATTGGGAATATGGAGCAGGGTGTTTTCCACTTTCCCTCTTTTGATGCGTTAAAGTCACAGCTGCCAGCTGCCCCTGTCGATGTTCAGATGTTCAGTTATAAAACTAACCCACTGAGTGAACAATCAAACTTTAGCATCACCGGCACCGTTTGCAGCCTGTCACTCTCGGCGGATTCGTCTAATATCAAACTCAGTAATCTCTCAAGCTTCATCGAGATATTTCTGCCACGTCCCGAAGCCCCTGAGCCAGAACTTTCAAGCGTGTCCTTAAAATATGGGTTTGCTCTCATCACATCCTTCAACATCACTGATCCAAACGCAACTGTCATTGTTACTGCAATACCAGATCAAAATGTCTCTCTTCAGTTGCTCCTGTCTCCCACTTACCAGTCAAACAATCACAGCCAGCGCACCATCCTGACTGGCCATGCCGATAATTATCAGTGGATCATCCACCCAGAGATGATGAACTCTACTAACGGGACCATGTATGTGAACGTAACACTGTTTAACTACACGTCATCCCGTCCAGTGACAGTCAGTATCTCACTCATGAActttaagtgtgtgtactgGGATGTAAACCAAAAAGATTGGAGCAGAGATGGCTGCTGGGTTGGTCCTAAAACAGTACCCAAAATGACTCACTGCTTATGTAACCATAACACTTTCTACGGGAGCTCCTTCTTTGTGATGCCCAATCCAATAGACCTGTCACAAACAGCTGCCCTTTTCGCCACCATCAATCAAAATTACGTGGTTGTCTCTGTCCTATGTGGTTTCTTTTTCCTCTATCTGATCCTTGTGTTATGGGCGTGGTATGCTGACAAAAAAGCCCTGAGAACGCGCAAGGTGATGTTGCTGGAGGACAATCATCCATGTGCTCATTATAACTACCTGCTGAATATACAGACAGGAAACCGGAAGCGAGCAGGAACCTCAGCcaagGTTATGATGACCCTAGAAGGCACCGATGGCGAGAGCGACATCCATCACCTAGCTTACCCAGATCAACCTGTGTTTGAAAAAGGAGGAGTGGACATGTTCATGCTCAGCACTCCATTCTCTCTGGGAGAGCTGCAGAACATCAAACTGTGGCATGACAACACAGGAGGAGATCCAGACTGGTACTTGCAGAAGGTGACAGTGCAGGACTTGCAGACTCGTCAGGTCTGGCACTTCCTGTGCAACACCTGGCTAAAGGGCAACGGCGACACACCTTGTAAAAGAACCTTCAATCCAGCAAAGAAGAACGAGATCACCAGTTTTGGCAATTTATTCCATGCTCGGACATCCACCGGGTTCCGAGACGAGCACATTTGGATTTCTATTGTGAATCCTCCACGCCACAGCCCCTTCACCCGAGTGCAGCGAGTCTCCTGCTGTATGTGCCTGCTGCTGTGCACCATGGTCATCAACATCATGTTCTGGAACATTCCCAAAGATGGAGAGTCTCCTGTCATCATTAAGCTAGGATCCTTTGAACTCACCTGGCAGCAGATCATGGTTGCAGTGGAAAGCGCCCTGCTCATGTTCCCGATTAACATCCTCATTGTCACCATATTCCGCAGTATACAACCACGCGTTAAAAAAGATGACAAGGACATGCCCAAGACCAACAAAAGCGACAAATCTTCCGTTACTTCCATGCAGACTATCCTCAAGGACACACAGGATATTGTAAATCTCCTCAGCAAAAGCCCCAAAAATTGCGTGATTGCATTGCAGGAAAATCTTGAGACCACCGCAGATCTGTTCGCTGCACTTAATCAAATGCATGATGTCATCGTGAATATACAAGGCCAGACTGTCGGGGATCAGCACTGGGCCCACTGCAGCCGTTTTGTCTTTCACACTTTATGCCATCTGTCAACATTACTGGATCGCGCCGGAGAGAAAGTGTTTCCTCACCCCGAGGACCTCGATCTGGCTAAGaacacagtgaacatgatgCTGAAGAAGGCGGAGGTGTTGACCAGCACTCATCCAGTGCAGAGctttgTGCCTGTgcaagagaagaagaaaaaatccGGCTGCAAGCTGCCCTGGTGGTTTGTCTTTGTCGGCTGGGGTCTTCTCATTACCATAAGCGGCATCTCGACCTTCTTCACCTTGCTGTACGGCTTTCAGTATGGGAAGGAGTCATCCATTCGATGGGTCATCACCCTGACGCTGTCCATGTTCCAGAGCATCTTCATCATCCAACCTCTGAAGGTGAACGTGAACGCTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208808 lncRNA upstream 39577 5505770 ~ 5509854 (+) True G176406
TU208784 lncRNA upstream 125336 5420887 ~ 5424095 (+) True G176384
TU208361 lncRNA upstream 588905 4912078 ~ 4960526 (+) False G176056
TU208838 lncRNA downstream 39929 5602656 ~ 5614328 (+) True G176430
TU208878 lncRNA downstream 114479 5677206 ~ 5690860 (+) True G176469
TU209042 lncRNA downstream 251868 5814595 ~ 5815106 (+) True G176596
TU209054 lncRNA downstream 292798 5855525 ~ 5857242 (+) True G176608
TU209160 lncRNA downstream 389087 5951814 ~ 5952155 (+) True G176700
XM_026930917.2 mRNA upstream 25001 5522248 ~ 5524430 (+) True LOC113536777
XM_026930286.2 mRNA upstream 52978 5489015 ~ 5496453 (+) True sult5a1
XM_026930821.2 mRNA upstream 141984 5399124 ~ 5407447 (+) True csnk2a2a
XM_026930289.2 mRNA upstream 150530 5394017 ~ 5398901 (+) True LOC113536403
XM_026930282.2 mRNA upstream 160852 5379911 ~ 5388579 (+) True si:ch211-146m13.3
XM_026930579.2 mRNA downstream 145662 5708389 ~ 5710341 (+) True gemin6
XM_026930675.2 mRNA downstream 201080 5763807 ~ 5772916 (+) False rfc4
XM_026930676.2 mRNA downstream 201101 5763828 ~ 5772916 (+) True rfc4
XM_026930669.2 mRNA downstream 225720 5788447 ~ 5828396 (+) True ankrd13c
XM_034308805.1 mRNA downstream 225726 5788453 ~ 5827313 (+) False ankrd13c
TU208265 other upstream 888295 4656605 ~ 4661136 (+) True G175977
XR_004579071.1 other upstream 1252184 4281244 ~ 4297247 (+) False nadsyn1
TU207714 other upstream 1891155 3647370 ~ 3658276 (+) False btbd10b
TU206600 other upstream 3470804 2078077 ~ 2078627 (+) True G174546
TU206587 other upstream 3489148 2058970 ~ 2060283 (+) True G174536
XR_003403680.2 other downstream 1559658 7122385 ~ 7131506 (+) False LOC113536390
TU209855 other downstream 1705157 7267884 ~ 7271320 (+) False rpl37a
trnae-cuc_24 other downstream 2039499 7602226 ~ 7602297 (+) True trnae-cuc_24
trnar-ucg_6 other downstream 2680695 8243422 ~ 8243494 (+) False trnar-ucg_6
trnar-acg_6 other downstream 2682225 8244952 ~ 8245024 (+) True trnar-acg_6

Expression Profile