RNA id: XM_034308893.1


Basic Information

Item Value
RNA id XM_034308893.1
length 3678
RNA type mRNA
GC content 0.48
exon number 21
gene id rubcn
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 10565259 ~ 10579393 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGTAaacactgcgcatgcgcaatgCAGTAAGGCGTGTGTAAGGAGGAATTTCGCTCGGGAACTCTGACAGTTGTGTAAAATTGAGCTCGGACTTTATATTTTCTGTCTAATAAAATATGGCCGGATAATAATAAACTACAGGAGAGTTGAAGATGGAGATCTGCTCAGAGGCGGACAGTGTGGAGAAAAGACGTGAACACTGGAAGCTCCTGTCCAACCTGAAGACAACCGTCGAAGGACTTCTGTCTACAAATAACCCAAATGTCTGGTCTCGCTATGGAGGATTGCAGCGACTTCACAAAGACATGACCAACATCCTGAGTCATGGCCTCAAACACGAACAGGTGTACTATAAGCAGAAGGATTACTGGCGCTTTGTGTGGTGTCTGCGGTCCATCAGTCCCAGTCTTGCTCCTCATGTAGAACAgttcagtCAGATGGAGCCGGTGTTAAgcagcagtgttcagtgtgagagTGATAAGGCTGAGCGTTGGCTCCTCCACAGCCTGCAGAGTCACACACTCTCCATACAACTAAAACCCCTGatcacacaccacaacaccacccGCAAGTACtatacagACGAGGCGTTTCTTCTGAGTGAGCTGCATGTGGCAGCCATGTTTCAGTGTTTGGAGGCGGTGGAGCAGAACGACGCACGGCTGCTTGCCCTCATCAACACCACCCGCctgTCCTATTTGAAGGAGTGTGTTCCTGTGGATCTGCTCACCTCTCCGCAGTGTGTGCTGCCTGGAGTTTCCATACGCACACACGCGCCGTCCTGCTCATtcagagacaacacacacacttcatacaccGAGAGGAGTACAGatgcagcagtgtgtgtaagcGCCTCGGGGGCCCCGTGGGCGTGTTTGAGCACTGACCAAAGCATCTTGGAACCACTGATAACCCAGAATTCTCAGACCGACTCCACCCATCCTGTTAACCCTGCCCCCTCTGAGGGTGGAgactgtgatggtgatgatgggcCAGAGTATCTCGCCATCGGGAACCTGGGGAGGCGGAGCCGCAGAGGTTCTGGCAGCTCGGCACAAAGCACCGAGCACTCTCAGATCAGGGCCCACATacctgaagctccgcccccttcccaAAGACGCAGCTCCTTCTCTGATATGGAAAGGGGAAAGAGACGAAGCTTCAGGGGTCACGCAAGGTCCCTGTCTGATACAGGGGTcatgcagaaacacaaacaagGAGGGAACCAGAGGAAAATCACCATTATAATAGAGGATCCCGCTGAAGagtcaGCTGTAGATGAGCAGTGTGTGAGTAGTTTCGGGCCTTTCTCCCCTCACAGCAGTGACAGCAGTCACAGTTCTCTCTACATGGAGGCCGGAGGACTTCAGTATGGTAGCGGGTCTGATGGATTGTTCCGGAAGCCGTCAGAAGGTCAGAGTCTGATCAGCTACTTGTCAGAGCAGGACTTTGGCAGCTGTGCAGATCTGGAGAAGGAGAATGCACACTTCAGCATCTCCGAATCTCTGATTGCCGCCATCGAGCTAATGAAATGTAAGATGAGGGCGGAGGAGGCAGATGAGGATGGAGACAGCGACAGTGAGATCCAGCAGCTCAAACAGAAGATCCGTCTGCGCAGACAGCAGATCCGCCGCAACCGCCTGCAAACTCCCAGCTCTACCCACCAAActcttCCCTCCACAGACAGTGGTGGATCACTGCGGAGCTCCAGGGATTCCCTGCTCCACTCTGACTCTGGATCAGCTGATGATGTGGAGGACCCTGTGCTGAGAGATGCAGATGTTAAACAGAATGTAAATCTGAGCAGCAGGTCCTTCATCAGCTCTGATTCTGTgtCTCAGTGGTTGTTGCAGTCGAATAGTGCTGAATCAGTTGCAATGGGGCTGCTGCGTCAGTTTGAGGGTTTGCAGCTTCCCGCTGCCTCTGAACTTGAGTGGCTTGTCCCTGAACATGATGCTCCTCAgaaggtgctgccgATGCCTGACTCGGTGCCGATCTCTCCGGATGATGCTGCTGCCGATtgttttatttgcagCCCTATTGTATCCTCATATTttactctgtgtttgtgtgtgttcaggaggaAGGTGTTGgtgatgaagcagaattacAGGTGTGCAGGATGTGGAACTCGTATTGACCCAGattaCATTAAGAGGCTGCGTTACTGCGAGTACCTAGGCCGGTATTTCTGTCAGTGTTGCCATGAAAACGCGGTTGCCGTGGTGCCAGGGCGCGTCCTGTGTAAATGGGATTTCAGTAAATATTACGTCAGTAACTTTGCCCGAGACCTGTTGCGAAAAATTGCCCAGGATCCTTTGTTCAACCTCAACGACATCAACAGCGGCTTGTACAAGAAGGTGAAGAACCTGGAGGCCGTGCGGgtctTGAGGCTGCAGCTGTTCCACATGAAGAACCTCTTTAAAACCTGCCGTCTAGCCAAAGAAGTCCTGCAGCACTTTGACTCAGTTCCTGCACACTTGACTGAGGATCTCCACCTGTTTTCTCTGAATGACCTGACAGCCGTGCGTGCCGGTGACCTCGCACCCAAGCTGCGTGACCTTGTGCGGGTGGGGTCAGAGCATGTCGCTTCCTGTGTGCTGTGTCAGGCAAAGGGATTCGTTTGTGAGTTCTGTGGGAATGATAAGGACATCATCTTCCCCTTTGAGCTGAACAAGTGTCGCCGCTGTGAGgaatgCAGTGCGTGTTATCACCGCTCGTGCTTTAAGAACAAGAGTGTGTGTCCGCGGTGTCGCCGCCTGGCCGAGAGACGAGAGAGGATgaacagcacaaacacagaggaggaggaggggcaataacacacacagacacacacactcactcacactcactcacacactcacatatcaCTGCTTTAGattaaatgtgtaatgtgtgatattgtgttACTGCAGATATGCTGACTCTGaccattttgttaaaaatctttatttttttattttcagagatTTTTATGTCACATCaaaaatcagtgtgtttaaattatttctcatttatttttgtgtgtgtacctcatCAGCACTTTGTGTTTTACATTGAACAGGTTTGTgtgattgttttgtgtgtgtttgtatgtgtttaatCAGGTAATACAGCGGGTCTCACtacatatatgtattttataaatatagaaaattaatgtaATCAAATTGTTTAACCAGTATTGAAACCTAATAACAATGTTAGCATAATGCTAACTATGAGTGAAATCACTGTTGGGTTAgttactctctctcacacacacacacagacaattttCTATAGATTCTAATCTTCAGTCTGTGACTGAGTGTGTAAATAAACTCATATGGTAATGataccactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcctgcgtGCACAGCAGCTCTGCATTAACCTGATGCTAACATGACCAATGCTCTTTCTGTCACACaaatttttgttcttttatattttcagcCTTTGTGTGTAAATGGAGTAAATCAGTTTCACGCTCCATCTCACTCCTGATTCTCATCACTTCATCCTAAAAGGCTTTTATTTGAATAAACCTGAGATTAAAATGCACTACTGAGAAAATGTGTATGAAAGTTaaataatgtgatataaatTTACTATTAAAGACGTTCAGACTGTTTTA

Function

GO: NA

KEGG:

id description
K19330 RUBCN; run domain Beclin-1 interacting and cysteine-rich containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212282 lncRNA upstream 67547 10497488 ~ 10497712 (+) True G179428
TU212281 lncRNA upstream 68119 10496648 ~ 10497140 (+) True G179427
TU212280 lncRNA upstream 72790 10492033 ~ 10492469 (+) True G179426
TU212279 lncRNA upstream 73486 10486697 ~ 10491773 (+) True G179425
TU212048 lncRNA upstream 304651 10256766 ~ 10260608 (+) True G179212
XR_003403698.2 lncRNA downstream 203732 10783125 ~ 10784114 (+) True LOC113536738
TU212443 lncRNA downstream 225712 10805105 ~ 10805311 (+) True G179558
TU212446 lncRNA downstream 229643 10809036 ~ 10809271 (+) True G179561
TU212441 lncRNA downstream 250931 10830324 ~ 10850865 (+) False LOC113536516
TU212457 lncRNA downstream 284256 10863649 ~ 10863850 (+) True G179572
XM_034308892.1 mRNA upstream 1766 10555285 ~ 10563493 (+) True LOC113536420
XM_026930793.2 mRNA upstream 81648 10482171 ~ 10483611 (+) True cx36.7
XM_034308925.1 mRNA upstream 85936 10460121 ~ 10479323 (+) True lmnl3
XM_034308924.1 mRNA upstream 85936 10460121 ~ 10479323 (+) False lmnl3
XM_026930728.2 mRNA upstream 307681 10251725 ~ 10257578 (+) True saxo2
XM_026930758.2 mRNA downstream 38419 10617812 ~ 10623164 (+) True tctex1d2
XM_026930894.2 mRNA downstream 70865 10650258 ~ 10674052 (+) True LOC113536756
XM_026930494.2 mRNA downstream 231277 10810670 ~ 10850923 (+) True LOC113536516
XM_026930495.2 mRNA downstream 231277 10810670 ~ 10850923 (+) False LOC113536516
XM_034308868.1 mRNA downstream 534251 11113644 ~ 11160226 (+) False LOC113536667
TU210703 other upstream 2294510 8253421 ~ 8270749 (+) True LOC113536578
TU210704 other upstream 2294510 8255867 ~ 8270749 (+) False LOC113536578
trnar-ucg_8 other upstream 2317171 8248016 ~ 8248088 (+) True trnar-ucg_8
trnar-acg_6 other upstream 2320235 8244952 ~ 8245024 (+) True trnar-acg_6
trnar-ucg_6 other upstream 2321765 8243422 ~ 8243494 (+) False trnar-ucg_6
TU212529 other downstream 516760 11096153 ~ 11098811 (+) True G179632
TU212546 other downstream 580953 11160346 ~ 11161125 (+) False G179643
TU212545 other downstream 580993 11160386 ~ 11161597 (+) True G179643
TU212547 other downstream 580993 11160386 ~ 11161217 (+) False G179643
XR_003403700.1 other downstream 832667 11412060 ~ 11412127 (+) True LOC113536790

Expression Profile