RNA id: XM_034308905.1


Basic Information

Item Value
RNA id XM_034308905.1
length 1747
RNA type mRNA
GC content 0.50
exon number 3
gene id LOC117598435
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 18666576 ~ 18671367 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagaaacagagcgaACGCCCTTTCACCTACATTCAGCTCAAGCTCAGCCTGTGTAGTGCAGGGCAGTTTATGGgtCGCAACAACACTATCCACAGCGTCATTTTGGCCATCTTTCCtgcagagatgtgtgtgtgcgtacgtgCGTGCGTGTACTGTCTAGCCATGTGGAAGAATAGAATGTCACATGACAGAAAGCAGCAGACAAAATGGCGATATCTGCATCAGAGAGTGCTGAAAAATTAGCACAACTGAATATgcatctgaatatgaatatgcatgtaTCCAAGATGGCGGCACGGCAGTAGCACGCAGCGGCCGCTCCGGatccaaactgtttttttgtttttagcctgACTTTTTAACGACACACGGACACATCGGAGCAACCAGTGTAATAAAGTACAGAAACCATGCAACAACTGATCTGCACAAtgatctgctggagaagctaCGCGATCTCTGCTTGCTGCagggaccaggcctccagccccCGGGGTCACCTGATGCCAGTGGCCGGGGGAAGGGACGTCTTAAGCAGTGCATGAGGAAGTAGAAGCGCGGCAAGAAGGCAGGGGTCCGTGCTAGGCTTAAAACAAAcccaatgtctgctccctggacaataaattggattacatccgactccagcaaactacgcggcatgagtttagagactgttgcatctttgttttcacggagacgtggctcagcgacagagcTCTGGACACCGCCATTCAGATAGACAGGTTAGCCTCATTTCGTGCCAACAGAAATGCAGCTCAGTGTGGTAAGGTTTGCAGcggtggcttgtgtgtttacgtCAATACGGAACGGTGCAAGAACTCAGTGCTGGTTTCTAGTTGctgctcatcgctggtggagtttggGACTGTTAGATGCAggccattttatttaccacgggaattcactaCTGTCTTTATAATCAGAGTGTACATTCCCCCAGTACTAATGCTAAGGAGGCGCTCGGTGAACTGTGTGGagctattagcgagctgcaaAATTCACACCCTGACAGACTGCTTATTGTTgctggagatttcaaccatgcaaatttCAAGtaagtgctccctaaattccatcagcatgtggactttttGCAATGTACCTGGCAGAGCCACGCCCCCAtctcggctactcagaccacatctctgtaaTGCTAATCCCAGCAAACAGGCCGCTCATCAGATGCTCCAAActggttctgaagcaggtgaaaagctcgccagcaggagccatctctgctcttcaggactcttttgaacacactgactggcacatgttcagggaagcggcaactgacaccaacttcaccaacttggaggaatacatGGCATCAGTAACCGGCTACATCAACAAGTGCATCAATGacatcactgtctccaagatGATCACCACACGCTCcgaccagaagccgtggatgaccaCAGAGGTGCGTGCGCTGCTGTGGACCCATGACTCcaccttcagagcaggcgacaaggtggtcctaagaacagcgagggccaaactgtcccgggccatcagagaggcaaagcgcacacacactcagagaatcCAAagccacttcaaggccagcatAGACATGcagcgcatgtgGGTGTCACAGCCAACTTCACAAGATCTGGAGCTTGCTGAGGATGAGATGAGCCAGGACAATGAATGTAACTGGAATTCAGCCAAATGTGTTGGATCTCTGCATCTCCATGGGCCTCTCAAAATCCAGATTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217565 lncRNA upstream 61654 18598718 ~ 18604922 (+) True G183796
TU217566 lncRNA upstream 69336 18593698 ~ 18597240 (+) True G183797
TU217567 lncRNA upstream 77860 18576732 ~ 18588716 (+) True G183798
TU217575 lncRNA upstream 96617 18568625 ~ 18569959 (+) True G183805
TU217556 lncRNA upstream 228615 18429506 ~ 18437961 (+) True G183787
TU217958 lncRNA downstream 219872 18891239 ~ 18894875 (+) True G184167
TU218141 lncRNA downstream 341040 19012407 ~ 19012612 (+) True G184309
TU218173 lncRNA downstream 409885 19081252 ~ 19081485 (+) True G184340
TU218370 lncRNA downstream 788451 19459818 ~ 19461690 (+) True G184504
TU218369 lncRNA downstream 790457 19461824 ~ 19462843 (+) True G184503
XM_026914759.2 mRNA upstream 115422 18427082 ~ 18551154 (+) True si:ch211-51h4.2
XM_034308949.1 mRNA upstream 115422 18460802 ~ 18551154 (+) False si:ch211-51h4.2
XM_034308548.1 mRNA upstream 257519 18190616 ~ 18409057 (+) True LOC113526284
XM_026928435.2 mRNA upstream 532595 17933916 ~ 18133981 (+) False nlgn1
XM_026926001.2 mRNA downstream 47857 18719224 ~ 18741759 (+) False si:ch211-247n2.1
XM_034308927.1 mRNA downstream 47901 18719268 ~ 18741759 (+) False si:ch211-247n2.1
XM_026926016.2 mRNA downstream 51659 18723026 ~ 18741759 (+) False si:ch211-247n2.1
XM_026925993.2 mRNA downstream 58039 18729406 ~ 18741759 (+) False si:ch211-247n2.1
XM_026925986.2 mRNA downstream 58043 18729410 ~ 18741759 (+) False si:ch211-247n2.1
TU217312 other upstream 869957 17795445 ~ 17796619 (+) True G183549
TU217273 other upstream 884763 17773713 ~ 17781813 (+) False ect2
XR_004579060.1 other upstream 915074 17672171 ~ 17751502 (+) True mcf2l2
XR_003403373.2 other upstream 917285 17672171 ~ 17749291 (+) False mcf2l2
XR_004579126.1 other upstream 1030181 17598464 ~ 17636395 (+) True anos1b
TU218227 other downstream 583590 19254957 ~ 19269222 (+) False adgrl4
TU218488 other downstream 860714 19532081 ~ 19553522 (+) False si:ch73-40i7.5
TU218486 other downstream 879015 19550382 ~ 19553522 (+) False si:ch73-40i7.5
TU218602 other downstream 1023877 19695244 ~ 19700274 (+) True rps15
XR_004579107.1 other downstream 1156619 19827986 ~ 19834414 (+) False tax1bp3

Expression Profile