RNA id: XM_034308908.1


Basic Information

Item Value
RNA id XM_034308908.1
length 1609
RNA type mRNA
GC content 0.41
exon number 9
gene id LOC113533188
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19289267 ~ 19297548 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGACTCCTAAAATGACTCCTCTGATACCAGAGCACAGAGATCCTGAGCAAGGTTTCATCAAGAAAGACACAGATAGACACAAAGAGTATCAGGTAGAACCGTGGGAGATATACCAACCAAAATGGAAGTACTGTGCAGAATTAAGCTCTTATGGAGCTGCAGTGTGCACTGAACTGGAAGCTAAACGGGTCCAAAACCTTAAAGACCATCCTCTTTACTACTTCTTGGGATACACTCAGTTCTCATGTCAACTTGAGCCGGAACTTCTGAAAGCACCCAGAAACAAAGATGAACTGTTTTCGATctatgcatttctttttttcttctttatttttgagAAATGTCAGACTGACTCCCATTCCTGTGGGTATCCCCCATCCCAATGGTGTAGCAGTTTGGAAATCGCAGTGGAATGTGGGGTTCAGAAGCAGTGTTTGGAGTTAAACGCCACCAGGCCTGATCCATCTGTCCCTCCTGTAGAGGTAGCTGTTTACTATGAAAGCCTCTGTCCAGGTTGTAGAACCTTCCTGACTGGTCAACTCTTCCCTACCTGGACAATGCTCAGAGATATCATGAGGGTACGCCTAGTGCCCTATGGCAATGCAAagGAACTTCCTGAACAGAATTTGTTTTCATGCCAGCACGGCAAGCAGGAATGTCAAGCTAACATGATCGAGGCTTGCATTTTGAATGTCACTGGCCATGCAGCGTTTCCAATTATTCACTGCATGGAGTCTTCAGCGGATGTGATAAATGCAGCCCAGCCTTGTCTGCAGTTGTATGCCCCATCTGTGAAATGGGGGACGGTAGAATCATGTATGAGAGGAAGTCTCGGACACCAGCTCATGCATGAGAACACCCTGAAGACCCGGGGTCTCAGACCACAACACACCCATGTCCCTTGGGTCACAATAAATGGGgtATACACTGATGACTTGGAAGATAAGGCAATGTCTACTCTCTTTAGCCTCATCTGCAAGTTGTATAAAGGAATCAAGCCACCTACCTGCACTGGAGCTCGGATGAAACGGGATCAAAGCTTTTGTTAcagctttttttaatgtacaccAATGCAGTTTAACTATTTCTAAGCCTCGATAAAGAAAAGCTAGGGTGATCTTCACATGTAAGATGTGAGTTATGTGCTTCTTAAAAAATGCTGACTTCATATTAGAAGCGGTGTAGCTTAAAATAACTTAACACAACACTTCTTATTAGTTTCTGTTCCATCATAATATTTTACTGaagacaataaataatataaatgcaaCTAATATCCACATAAGCATATGAGATTGAAAAGGTCTGAACTTTACAGCAGAGGTATGGTTGTGCTTCATGAAAATGATTCTAATCCTGTTATAGAGCAGAAattgcactatatatatatatacgcttGCTTAAGAAGAGTAAACAGAACATGTACTATCTTTATACCATTCTGTATATTGAAACCAGTAGTCATACATGAGATCCCTTCTCTTTCATCCACCTTAGGTCAATACTGTTGTTTGCTGAAATGTTCCTGTTGTTAGATTGGACCATTCCACTTTATGTTTCAGTTACACAAATGTTActtattaaaggtgcattaggcaAAATTTGTCC

Function

GO: NA

KEGG:

id description
K08059 IFI30, GILT; interferon, gamma-inducible protein 30

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218173 lncRNA upstream 207782 19081252 ~ 19081485 (+) True G184340
TU218141 lncRNA upstream 276655 19012407 ~ 19012612 (+) True G184309
TU217958 lncRNA upstream 394392 18891239 ~ 18894875 (+) True G184167
TU217565 lncRNA upstream 684345 18598718 ~ 18604922 (+) True G183796
TU217566 lncRNA upstream 692027 18593698 ~ 18597240 (+) True G183797
TU218370 lncRNA downstream 162270 19459818 ~ 19461690 (+) True G184504
TU218369 lncRNA downstream 164276 19461824 ~ 19462843 (+) True G184503
TU218362 lncRNA downstream 188824 19486372 ~ 19487778 (+) False smim7
TU218363 lncRNA downstream 188824 19486372 ~ 19487778 (+) True smim7
TU218480 lncRNA downstream 229329 19526877 ~ 19545502 (+) False LOC113546543
XM_034308787.1 mRNA upstream 1624 19271952 ~ 19287643 (+) True vtg3
XM_026933503.2 mRNA upstream 19006 19254931 ~ 19270261 (+) True adgrl4
XM_034308722.1 mRNA upstream 318720 18912318 ~ 18970547 (+) True ttll7
XM_026928468.2 mRNA downstream 3073 19300621 ~ 19309461 (+) True mpv17l2
XM_026910829.2 mRNA downstream 21739 19319287 ~ 19322971 (+) False LOC113524462
XM_026910899.2 mRNA downstream 21876 19319424 ~ 19322971 (+) False LOC113524462
XM_026910752.2 mRNA downstream 21881 19319429 ~ 19322971 (+) True LOC113524462
XM_026929145.2 mRNA downstream 27185 19324733 ~ 19403219 (+) False LOC113535669
TU218227 other upstream 20045 19254957 ~ 19269222 (+) False adgrl4
TU217312 other upstream 1492648 17795445 ~ 17796619 (+) True G183549
TU217273 other upstream 1507454 17773713 ~ 17781813 (+) False ect2
XR_004579060.1 other upstream 1537765 17672171 ~ 17751502 (+) True mcf2l2
TU218488 other downstream 234533 19532081 ~ 19553522 (+) False si:ch73-40i7.5
TU218486 other downstream 252834 19550382 ~ 19553522 (+) False si:ch73-40i7.5
TU218602 other downstream 397696 19695244 ~ 19700274 (+) True rps15
XR_004579107.1 other downstream 530438 19827986 ~ 19834414 (+) False tax1bp3
XR_003403385.2 other downstream 568250 19865798 ~ 19871463 (+) True ccl44

Expression Profile