RNA id: XM_034308934.1



Basic Information


Item Value
RNA id XM_034308934.1
length 7101
RNA type mRNA
GC content 0.42
exon number 21
gene id pik3ca
representative True

Chromosome Information


Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 18764099 ~ 18783878 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


AATACTGCACAGGAGTGAATTATTAGGAGACCAACTCTTCTGATGTTCCCAACATGAAGACAGCTGTTTTCAGGTTACCCTGAAACTGCTCTATGGGGATAAAGAAGTTGAATAATTTAAAGTGTATTAATTGAGATTGAACGATTGTGAGAACTAGAGAACATGCCTCCAAGGCCATCGTCTGGAGAATTATGGGGCATCCATTTGATGCCCCCCAGGATTTTGGTGGACTGTCTCCTGCCCAATGGCATGATCCTGACCTTGGAGTGCCTCCGTGAGGCCACACTTGTCACCATCAAACATGAACTGTTTAAGGAAGCACGAAAGTTCCCGCTCCATCACCTGTTGCAAGAGGAAGCCTCATACATCTTCGTCAGCGTAACACAGGAGGCCGAGCGGGAAGAGTTTTACGACGAGACCAGGAGACTCTGTGATCTCAGGCTCTTCCAGCCTTTCTTAAAAGTCATCGAACCTGTGGGCAACAGAGAGGAGAAAATTCTCAACCGGGAAATTGgttTTGCAATTGGCATGCCTGTGTGCGAGTTTGATCTAGTGAAGGATCCTGAAGTTCAGGACTTCAGGCGAAATATACTTAATGTCTGCAAAGACTCAGTAGAACTCAGAGATGCCAACGGGCCGCATAGTCGTGCATTATATGTTTACCCTCCCAACGTGGAGTCTTCACCAGAGCTTCCAAAGCACATTTTCGGCAAATTAGACAAAGGTCAGATTATCGTGGTCATCTGGGTTATTGTGTCACCTAACAATGACAAGCAGAAGTACACGTTGAAGATCAACCACGACTGCGTCCCTGAGCAGGTCATAGCAGAAGCCATCAGGAAAAAGACTCGCAGCATGCTGTTGTCTCCCGAGCAGCTGAAGATGTGTGTGCAGGAATACCAGGGCAAGTACATCCTCAAAGTGTGTGGCTGTGACGAGTACCTGCTGGAAAAGTACCCTATCAGTCAATATAAGTATGTGAGGAGTTGCATTATGCTGGGGCGAATGCCAAACCTAATGCTGATGTCAAAGGATAGCTTATACTCTCAGCTGCCCATGGACACATTCACCATGCCCTCGTACTCACGCCGCATCTCCACAGCCACACCGTACATGAATGGGGAAGCCTCCAGTAAATCCCTGTGGACCATCAACAGCAACCTGAGGATACGTGTGCTCTGTGCAACATACGTCAATGTAAACATCCGGGACATTGATAAGATTTATGTCCGGACAGGGATCTACCATGGAGGAGAGCAGTTATGCGACAATGTCAACACGCAACGTGTGCCATGTTCAAACCCAAGGTGGAATGAGTGGCTTATGTATGACATGTACATTCATGACATTCCCCGAGCTGCTCGtctttgtctgtccatctgCTCTGTGAAGGGGAGGAAGGGAGCAAAAGAGGAACACTGTCCGCTGGCTTGGGGAAATGTAAACCTCTTtgactacacacatacactggtCTCTGGGAAAATGGCACTGAACCTGTGGCCGGTGCCACACGGCCTAGAGGATCTGCTAAACCCCATCGGCGTCACAGGCTCCAACCCCAACAAGGAAACTCCATGTCTGGAGTTAGAATTTGACTACTTCAGCTGTCCTGTGAAGTTCCCTGACATGGCCACAATAGAGGATCATGCTAATAAGATCATGTCCAGAGAGATGGGATACAATTACTTTCAAACTGGACAGagcAGCAGACAGGCTCGAGACCACCACATAATGGAAGGCGATATCGAGCAGCTGCGGCAAGTAGCAAACAGAGACCCACTTTCTGAGATCACTGAGCAGGAAAAGGACTTCCTGTGGAGACACAGgcAGTATTGTAAAAATATACCAGAGATTCTTCCTAAGATTCTCCTTGCTGTAAAGTGGAACTCCAGAGATGAAGTTGCACAGATGTATTGCCTTCTTAAAGACTGGCCCGCAATAAAACCAGAACAAGCCATGGAGTTACTTGACTGCAACTATCCAGATCCGATGATACGAGACTTTGCAGTACGGTGCCTTGAGAAATATTTGACAGATGATAAACTCTCCCAGTACCTTATTCAGTTGGTCCAGGTTTTGAAGTATGAGCAGTATCTCGATAACCCCTTGGTGCGATTTCTGCTGAAGAGGGCCCTGACCAACCAGAGGATTggacatttctttttttggcaTTTGAAGTCAGAGATGCACAACAAGACGGTGAGTCAGCGTTTTGGCCTGCTGCTGGAGTCATACTGCCGTGCCTGCGGTATGTATCTGAAGCACTTGGGCAGACAGGTGGAGGCCATGGAGAAACTCATCAACCTCACAGACATACTCAAGCAGGAGAAGAAGGATGAGACTCAGAAGGTGCAGATGAAGTTTTTGGTGGAGCAGATGAGGAGGCCGGATTATATGGATGCCCTCCAAAACTTCACCTCTCCATTGAATCCAGCCCATCAACTAGGCAACCTACGGCTTGAAGAATGCAGAATCATGTCATCAGCCAAGAGGCCACTGTGGCTTAACTGGGAAAACCCTGATATCATGTCAGAGCTTCtcttccagaacaatgagatcATCTTTAAGAATGGGGATGACCTGAGACAAGATATGCTGACActtcaaatcattaaaataatggaGAACATCTGGCAGAACCAGGGGTTAGACCTCAGAATGCTTCCCTATGGCTGCCTGTCGATTGGAGACTGTGTGGGCCTTATTGAAGTTGTGAGGAGTTCTCATACCATCATGCAAATCCAGTGTAAAGGAGGTCTCAAAGGAGCATTGCAGTTCAACAGCTCCACCCTGCACCAGTGGCTGAAGGACAAGAACAAGGGCGAGACGTATGACATGGCCATTGACCTGTTCACGCGATCCTGTGCTGGTTATTGTGTGGCCACTTTTATTCTGGGCATTGGTGACCGACACAACAGTAACATCATGGTGAAGGACGATGGACAGCTGTTTCACATAGATTTTGGCCACTTCCTGGATCATAAAAAGAAGAAGTTTGGCTACAAGAGAGAGCGAGTGCCATTTGTCTTAACTCAAGACTTCTTGATTGTGATTAGCAAAGGAGGAACTCAAGAATGCACTAAAACGAGGGAGTTTGAGAGGTTCCAGGAGATGTGCTACAAGGCATACCTGGCTATCCGACAGCACGCCAACCTCTTTATCAATCTGTTCTCAATGATGCTGGGCTCCGGCATGCCAGAGTTGCAGTCGTTTGATGACATTGCTTACATCCGCAAGACCCTGGCACTAGATAAGACTGAGCAGGAGGCTCTGGACTACTTCATGAAGCAGATGAACGATGCTCACCATGGTGGATGGACCACAAAGATGGACTGGATCTTCCACACCATTCGACACCACGCCCAGAACTGAGCTGGAGTAGGACTGAGCCCTTATGAAAGGTGCTCGAGCTAGGACAGGACCCCTTGCCCAGAACCTACTGGCCTATCTTTGCTAGTAGAAACATGGCAACCAGACCTCAAAGTGGGGTAAAAACTACCCCCAAATGACCTTCAGAGCACTAAACAatccaaaatatttttcttctgtttcagtCTCCTTTTTTGGCATCCATACAGAAGAATACTAACCCTAATCTTTGTCCAGAATGGTTGTACATTGTTGCCCGTAGTTTTGTACTGTTgtctttttttggtttgttcttGCTGCTCTTTTCCTGGAGAGACCatggttattttattttattttattttatttcagtttttcttttgaggaaaaaaaaaaaaacacaaacaacaaagtcAACAGGAAGCGTTCTTTACTTTTAGGGCGCTCTTCGAATTACTCATGTCTTCCTCCAAGTACAAATGCCTTTAAATATGCATGGAACCTCTGAGGAACTCGTAGATTAAACAGGGTAGAAATTTTGTTGTTCGGTCTGCGTCCTGAAGGATGGTTTCTGTAGCAAATGTAGAGTAGATGGCATTTCCTATAGTCTTTCATAAACACTTGGCTCTTGGAAGCTATTGCCCTTGATCActacaaaagtttttttttttatgtttctccCCCTCCTTCACTACCATCATTTAATGCTGGGCTAAAGTGAACATGGCATTTGGATAGGAGGTATAATTTATTTTGCCCTAGTTATGAATTTAGAGGAGGAACATTTAGCCTTGTTACATGCACAACGTCAGCCATTAAACACTAACTAAAAAGAAACATTGTGCAACTGGTCCAAAAGGTTTGTGCAAAAGGCTACACAGTGGCCATCACTGCTCATGCAATTTCATTGCTTCATCACACAGAAGAAACTACCAGGAAAGGTAATGGGACTCAACATaggaaaaagcaaaaatatttcaaatcaaAGTTCCTTATTCTTCTTCAGTGTGACAATTAAGTAGAATTTTCCCCCACATACCTTTTTAGAGCAGCACAGGTGAAGACAAGTGATTGAGATAAAGCCTTAAGGGAACTTGATGCTTTGTGGCTGAATGCACAGTCCTCCCTCATGTGTACTGCATGCAACAGTAGAGGCTAACTTGGTGCTTAGTAAAACCAATTTACCTTCAGAGCAGTTTCTCTGTTTTCCACTAACAATAACCAGGCAGGTTAATTTATTGTCTGCACTTGTCCTCCCTTTCATTGTGTTGGATATTAGCTATATGATTCTGTAAGAAATGAAGAATGGTGCTAAATAGATTCCACTGTATAGAAAGGGAATAAACTCTGGCCGAAATGGATGTTTAATGCTGGAAAGGCTTTGAATACTGAGAATGGTTCAGCCATGGACATACGTTTTACCATTTACACTATAATTACAGTAGTACATGTCTGTATTGTATATATCTTCAACATACCTTTTGATGCTTCTAATCTCCTCATTATTGATTTTGTGCAGTACACAGTCAGATGTGAGGATCTGTCAGGTGTGTTGTCTGCAGTTTACTCTTGGAAGTTATAAAAATTCATATGCTTTAAACTTTGAAATGTAAAGTTGGCAAATCCCATGCAAAATCTTTCAAAGCTGTTTTAAGAAACTGCTGTCATAATGCATTTCACCAGAGCAGCTTCGTGCATTAAATTTCTCATTTGAGATGGAAAGAGAATCAGGAGTGCCACTTATTTTTGGCTAAAAAGCAAATGCTCTGAAGTGCATCCAATTAACAATAAACCATGTGGAATCATGTCCATAACAAATTGATTTTGCATGACAGAATGCTGAGGTTCAACCATTAAAGCCAAACCAACTGACCTCCAAATTAATATTGTATACGTCCACAATAATTTTGCTTTGGATTTACGTTGGTTTTTGAACCACAATGACTTGTCATCACTACCTGTTAATTCAACCTCTGTGGTTGTGGAGAaagtctgttgtgtttttgcattACATTTAAGCTGTGAAAATGTAAAGATTACAAATGACGTGCAATCATGCTATCTGTATGGATGTGTGTCTGCTGGTGGGAAGACTAGCTTGTGCTTGAGAATTTGTTCAAAACTTCACTACTTACTAGAAGCTTCTGTAtgtttagctttttaaaaaaaaatattctgttaaTTCAAGCCAAAGTTTTACATATGTCATGTTGTTCACCTGCATAACCACCTGAAGCATTAAAAGGGCCGGTCCTTGTTCCCGGACAGCTCAATGTTTTAATGAAGATAGAGCTATATTGTAAAGTCTGaaggacactttttgtttttttttgtactgtcaCAGAAGTATAGTGTTAACATTAGAAGTTTCTACCCATCGAATTTGAGATGAGGCCAAACAATCCGCCTTTTTGCTAAATGCAAAgacctgtttttatttcttcctaCATTCTGTAAAAAGAATATGTACAATTCTATTGGACTATCTTGCACCAAAATGTATTAATGCAAAGAAAAGGAAGGCATCTTTATATCCTCAATCTAATTTATAATAAGTATCCTGAAGTGAGATGGCATTGTGGTATTCcatttttcttattcatttatgtGCTGAATTTGAGGTTTAAGTGTGATTCTTATATGCAGTAAACTAATGAACAGGTATACAAACAGCAACTGATGTATGCAGGTGGCTTTTGCActttgtaattttcttttccCCTTATTTACCATGACATCAGTCCTGAAGGACAGAGTAGTTCAACTGCATGTCTTTAGAAGCAGCATTACCAATTGTACTCCTCTACTGACTGAAACAGATCAGATGAATTAGCAGTTAGTCCTTGTAAGCAGCCTTATGTTAGCCCTCCAGAAGCCATTAGTGCATGGTTGTGGTcactacttttttgttttgtctgtacAGGTTACAGATCCTTTGGGGCTGGACCCGGTTAAAAgcccattttaaaatgtttgtgatcATGTGCAAATGCTTtgtattttccttctttttcaccAGCCAGGAAAACTGGGATGCTAGACTCTTGGCATCTTTTATATgaattgcaaagaaaaaaaaaacatatttcagtttcaaATGTACTTGAATATCATGGCTCCGAACCATCTTTGTGTGTTGAGAACAAATCTGTTATTGTGGTGTAGCACTGAAGGTTCGCTTGCATAGGCAATTTCATACCGATGTTGAATGTGAAAATAGTTGGGTTGTAAGAGGCTCTGCTGGAGAAACTCTTATAAAAGAAAGGTTGCCATTTTTAAATCCTAAGGAAAATATTTCACACTATGTAAAATGTGGCAAAAAGATGGGAGTTAATTGTATAAACTTGTAGTGAAAGGAAGGTCACAACTGTTTGTCTGCtattcttaaaatgtttttgagtgGTTACATTTCTATATCATTCTCCTTAATATGTTTCCCTACTTATCATTTACCTATATTTTCATGTGTAATTATTTTCAAGAACACTACTTAGTGGGCCAAATAATGTTCCATACAGCCATCCTGCATGAGATTTAAGTTAAAGCCCTattatttctgttcattatatgtagatataaaaatatgtggCCTAAGACTGCACTCTATAGTAACCATCTATAACTGCTAACAATGACATAGCCTCAttctcatttatttactgtttcatTGTGCACCTCAGTTGAAAAGTTGCTTTGTATCCCCAATATTTTGAGTGTTATGTGACTATgtacaaataaacatatttgaagaaa

Function


GO: NA

KEGG:

id description
K00922 PIK3CA_B_D; phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha/beta/delta

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU217565 lncRNA upstream 159177 18598718 ~ 18604922 (+) True G183796
TU217566 lncRNA upstream 166859 18593698 ~ 18597240 (+) True G183797
TU217567 lncRNA upstream 175383 18576732 ~ 18588716 (+) True G183798
TU217575 lncRNA upstream 194140 18568625 ~ 18569959 (+) True G183805
TU217556 lncRNA upstream 326138 18429506 ~ 18437961 (+) True G183787
TU217958 lncRNA downstream 107361 18891239 ~ 18894875 (+) True G184167
TU218141 lncRNA downstream 228529 19012407 ~ 19012612 (+) True G184309
TU218173 lncRNA downstream 297374 19081252 ~ 19081485 (+) True G184340
TU218370 lncRNA downstream 675940 19459818 ~ 19461690 (+) True G184504
TU218369 lncRNA downstream 677946 19461824 ~ 19462843 (+) True G184503
XM_026926001.2 mRNA upstream 22340 18719224 ~ 18741759 (+) False si:ch211-247n2.1
XM_034308927.1 mRNA upstream 22340 18719268 ~ 18741759 (+) False si:ch211-247n2.1
XM_026926016.2 mRNA upstream 22340 18723026 ~ 18741759 (+) False si:ch211-247n2.1
XM_026925993.2 mRNA upstream 22340 18729406 ~ 18741759 (+) False si:ch211-247n2.1
XM_026925986.2 mRNA upstream 22340 18729410 ~ 18741759 (+) False si:ch211-247n2.1
XM_034308959.1 mRNA downstream 3093 18786971 ~ 18794580 (+) True LOC113531757
XM_026915196.2 mRNA downstream 51295 18835173 ~ 18842544 (+) True LOC113527405
XM_026926658.2 mRNA downstream 64675 18848553 ~ 18852369 (+) True ctbs
XM_026918120.2 mRNA downstream 81252 18865130 ~ 18877076 (+) True uox
XM_034308722.1 mRNA downstream 128440 18912318 ~ 18970547 (+) True ttll7
TU217312 other upstream 967480 17795445 ~ 17796619 (+) True G183549
TU217273 other upstream 982286 17773713 ~ 17781813 (+) False ect2
XR_004579060.1 other upstream 1012597 17672171 ~ 17751502 (+) True mcf2l2
XR_003403373.2 other upstream 1014808 17672171 ~ 17749291 (+) False mcf2l2
XR_004579126.1 other upstream 1127704 17598464 ~ 17636395 (+) True anos1b
TU218227 other downstream 471079 19254957 ~ 19269222 (+) False adgrl4
TU218488 other downstream 748203 19532081 ~ 19553522 (+) False si:ch73-40i7.5
TU218486 other downstream 766504 19550382 ~ 19553522 (+) False si:ch73-40i7.5
TU218602 other downstream 911366 19695244 ~ 19700274 (+) True rps15
XR_004579107.1 other downstream 1044108 19827986 ~ 19834414 (+) False tax1bp3

Expression Profile