RNA id: XM_034308959.1


Basic Information

Item Value
RNA id XM_034308959.1
length 4056
RNA type mRNA
GC content 0.48
exon number 28
gene id LOC113531757
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 18786971 ~ 18794580 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAATAACCAGGCATGAGAGCTGTTGTGCTTGTCTTGACTCTGGCCCTTGTGGcGAGTCATCAGACTAACCTTGtTCCAGAGTTTGCTGCGGGTAAGACCTTTGTGTACAAGTATGAGGGTTTGCTCTTGGGCGGTCTGCCTCAGGAGGGTCTGGCCAAGGCTGGTGTAAAAGTTAGCAGCAAGGTTCTCATCAGTGCTGCAGCCCAGAATACCTTTCTCATGAAGCTCCAGGATCCACAACTCTTTGAGTACACTGGCATCTGGCCCCAGGATGCTTTCAATCCTGCTGCAAAGCTCACCTCAGCACTAAATGCTCAGCTTGTGATTCCCATTAAATTTGAGTATGCCAGTGGTGTGGTAGGTAAGATATTTGCCCCTGCTGGAGTCTCTGCTACTGTCCTGAACCTGCACAGAGGTATCCTCAACATCTTTCAGCTCAACCTCAAGAACACACAGAATGTGTATGAAATGCATGAGGCTGGACCTCAGGGAGTCTGCAAGACCCACTACATGATCAGTGAGGATGAAAAGACCCATCAGATTGCTGTGAGAAAGTCCAAAGACCTGACCAACTGCCATGAGAGAGCCATAAAGGATATTGGTTTAGCTTACACTGAAACCTGTGTTGAGTGCCAGCAGAGGCTTAAGAGTCTGACTGGGACTGCAACATTCAGCTACATCATGAAGCCCACAGATACAGGTGCTCTGGTTTCTGAGGCCATAGCTGAAGAGGTCCATCAGTTCTCACCCTTAAATACAGTAACTGGAGCAGCTCAAATGAAAGCCAAGCAAATTCTGACTTTAATGGAGGCGCAAAATGCCCCTATTGCTCCCCATGCAGGTGAATACTTGGCCCGTGGATCCCTGAAGTATGAATTTGCCACTGAGATTCTTCAAACCCCCATTCAGCTTCTGAAGATCAGTAATGCAAAGGCCCAGATTGTAGAGGTCTTGCAGCATCTGGCTGCAAATAATGTGGAAATGGTTCATGAGGACGCTCCTCTGAAGTTTGTCCAGCTTGTCCAGCTCATGCGTGTAGCTACCTTGGAGAGTATTGAAGCTGTATGGGCTGAGTACAAGACAAAACCTCTTCACAGGCGGTGGATTTTGGATGCAGTTCCTGTTGTGGGTACACCAGCAGCTCTGAAATTCATTAAGGAGAAGTTTCAAGCTGATGAGCTTGCTGTCCCTGAATACACTCAGGCCCTTCTGGTTGCTTTGCACATGGTCACCGCTAATCCAGATGCCATCCAACTCACTGCTAATCTTGCTTCGAACCCCAAAGTCAAGACTATTCCAGTTCTGCGTGAGGTGATCATGCTTGGCTATGGTTCCATGATTGCCAGATACTGTGCTGAAGTTCCTACATGTTCTGCTGATCTTCTGAAGcctatCCATGAGACTGCTGCTGCAGCTATTTCCAAGGCTGAGATTCCTGAAATCACACTGGCTCTTAAGGCTCTGGGCAATGCTGGCCACCCTGCCAGCCTTAAAACCATCATGAAACTCTTGCCTGGATTTGgaagtgctgctgctgccatTCCCATGAGGGTCCAGATTGATGCCACCTTGGCTCTTAGGAACATTGCTAAAAAGGAGCCAAAGCTGgtTCAGCCAGTGGCACTGCAACTTTTCATGAACAAGGCACTCCATCCTGAAGTGCGCATGGTTGCCTGTATTGTGCTCTTTGAGACCAAGCCATCAACAGCCCTTATGGCCACTCTTGGTGGAGCTTTAGAGAAGGAGCCCAACATGCATGTTGCCAGTTTTGCTTATTCTCATATCAAGTCTCTGACCAGAAGCATGGCCCCTGATTATGTGCATGTGGCTGCTGCAGCAAATGTTGCTATCAGGATGTTGAGCCCCAAACTGGACAGACTGAGCTATCATTTTAGCAGAGCCATTCATTTCGATTTCTATATCTCTCCTTTCATGGTTGGTGCTGCTGGTAGTGCTTACATGATcaatgatgctgccaccacttTTCCCAGAGCTGTTATAACTAAAGCACGAGCCTACCTGGCTGGAGCTGCTGCTGATGTTCTTGAGTTTGGTGTGAGAACTGAAGGACTCCAGGAAGCTCTACAGAAGACTCGTGCTGCAGATGAAAATGCTGACCGCATGACTAAAATAAAGCGTACCCTTAAGGCTCTGATGGACTGGAAGTCTATGCCAACCAATCAACCACTGGGTTCCATCTTTGTCAAAGTTCTTGGACAGGAAATTGCTTTTGCCAACATTGACAAAACCTTCATTGACAAAATCATCCAACAAGCAGCACagACTGCTACTGGACCACAAGCTCGTGAACTGTTGAAGGAGGCTGTTAAGGCATTGCAGAAAGGCATTACCTTCCAGTATGCCAAGCCCCTGCTGGCAGCTGAGGTGCGCCGCATTCTACCCAGTTCTGTTGGTGTGCCAATGGAGCTTGGTTATTacactgctgctgttgctgctgcagcTCTCAAAGTTCAGGCAGCTATAACCCCTCCTTTACCTGAGCATCCAGAGACTCTCACTCTTGATCAGTTGATGAAGACTGATTTCCAGTTGCAAGCTGAGGCCAGACCAAGTGTTGCCCTCCAGACATTTGCTGTGATTGGAGTGAACACTGCCTTGATTCAGGCTGCTGTTATGGCCAGAGAGGTACACACTGTTTTACCAGGAAAACTGGCTATAAGAGCTGACCTTCCAAAGGGCAACGTAAAGCTGGAGGCTCTGCCTGCTGCTGTTCCTGATCATATTGCTGCTGTCAGCTTTGAGACCGTTGCTGTGGCCAGAAACATCGAGGACCTCCCCACTGAGAGAGTAGCATCTCTGGCACCTCCAATGCCCTCTGATGCTGCAGAGAGGTTTATACCTGCCTCAATTCAGAAATCCTTGTGTGGTTCTCTTCCTTATTTTAACATCAAAGGATGTCTTAAGTTTGCCTCCCAGAATGCTGGCTTTATGGAGTTAAATCCTCTGTATTATATTGCTGGACGACACTCAGCTCAAATTTCAGTGGAAAGAGGTGATGGTCCTGCACTAGAAAGACTGGAGGCTGAGGTACAAGTTGGACCTAAAGCAGCTGAGAAGCTCATGAAAGAGATCAGCCTTGTTGATGCTGATAATCCAGAAGAAAGTACCATCCTGTTGAAACTAAGGGAAATTCTGGAGGCTGGACTGAGGAATGtaaatttcagctcaatcaaCTACTCTTCCTCTGCCAGCAGCAGTAGGAGTGCCAGCAGCAGTAGGAGTGCCAGCAGCAGTAGGAGTGTCAGCAACAGTAGGAGTTCCAGCAGCTCTAGGAGTTCTTCCAGTGCCCGTGTGTCCAAGaatacaaatacatatggTCAGTTCTGGAAATTCCATAAGGATCAGtaCCTGACACCACAGGGAATGTCAAAAGCCAGCAGCTCATCTAGCATTGAGACCATACAGAGAAAGGCTAACCTacttggagatgctgttccacCTGCTTTTGCCATCATCGCTCGTGCTGTTAGAGCTGACCGCAAGCTGGGATACCAGTTTGCTGCTTATTTGGATAAGCCCACTTCAAGAGTACAGGTTGTGTTTGCCTCTATTGCTGAGAGTGACAAATGGAAGATATGTGCTGATGCTTTACTTCCAAGCAAGCATAAATTCGCTGCCAGGTTTGCTACTGGTGAGCAGTGCCAGGAATATTCTGTAGCTGTCAAGGCTGAAACTGGTCTGCATGAGGCACATCCTGCTGCACGGTTGGGATTCGAATGGAACAGAGTACCAAGAATCCTAACTATTGCTATCCCCTATGCCAAGTGGGAGTACATCTTTAAGGTAGCTCCCCTGGCTGGCGTTAATGCTGATAGAGCTGAGAATAATGAAAGAGAGATTGACTTCACTTTTGCCCTACCCACTCAAAAGTCTCTCAGCATTATTATGAGGATTCCAACGATGACACTGTCAAAGTCAGCTATGCCTCTTCCTATTGCCCTGCCGATTGAACAGGATGGAACTATTCCAGCTCTCAAGAATTTCGACATTCGTGCCATTGTTGAGAAATGGCTGAATGATATCCGAAATAGCTGA

Function

GO:

id name namespace
GO:0032355 response to estradiol biological_process
GO:0071391 cellular response to estrogen stimulus biological_process
GO:0009410 response to xenobiotic stimulus biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217565 lncRNA upstream 182049 18598718 ~ 18604922 (+) True G183796
TU217566 lncRNA upstream 189731 18593698 ~ 18597240 (+) True G183797
TU217567 lncRNA upstream 198255 18576732 ~ 18588716 (+) True G183798
TU217575 lncRNA upstream 217012 18568625 ~ 18569959 (+) True G183805
TU217556 lncRNA upstream 349010 18429506 ~ 18437961 (+) True G183787
TU217958 lncRNA downstream 96659 18891239 ~ 18894875 (+) True G184167
TU218141 lncRNA downstream 217827 19012407 ~ 19012612 (+) True G184309
TU218173 lncRNA downstream 286672 19081252 ~ 19081485 (+) True G184340
TU218370 lncRNA downstream 665238 19459818 ~ 19461690 (+) True G184504
TU218369 lncRNA downstream 667244 19461824 ~ 19462843 (+) True G184503
XM_034308934.1 mRNA upstream 3093 18764099 ~ 18783878 (+) True pik3ca
XM_026926016.2 mRNA upstream 45212 18723026 ~ 18741759 (+) False si:ch211-247n2.1
XM_026915196.2 mRNA downstream 40593 18835173 ~ 18842544 (+) True LOC113527405
XM_026926658.2 mRNA downstream 53973 18848553 ~ 18852369 (+) True ctbs
XM_026918120.2 mRNA downstream 70550 18865130 ~ 18877076 (+) True uox
XM_034308722.1 mRNA downstream 117738 18912318 ~ 18970547 (+) True ttll7
XM_034308724.1 mRNA downstream 117738 18912318 ~ 18970547 (+) False ttll7
TU217312 other upstream 990352 17795445 ~ 17796619 (+) True G183549
TU217273 other upstream 1005158 17773713 ~ 17781813 (+) False ect2
XR_004579060.1 other upstream 1035469 17672171 ~ 17751502 (+) True mcf2l2
XR_003403373.2 other upstream 1037680 17672171 ~ 17749291 (+) False mcf2l2
XR_004579126.1 other upstream 1150576 17598464 ~ 17636395 (+) True anos1b
TU218227 other downstream 460377 19254957 ~ 19269222 (+) False adgrl4
TU218488 other downstream 737501 19532081 ~ 19553522 (+) False si:ch73-40i7.5
TU218486 other downstream 755802 19550382 ~ 19553522 (+) False si:ch73-40i7.5
TU218602 other downstream 900664 19695244 ~ 19700274 (+) True rps15
XR_004579107.1 other downstream 1033406 19827986 ~ 19834414 (+) False tax1bp3

Expression Profile