RNA id: XM_034308979.1


Basic Information

Item Value
RNA id XM_034308979.1
length 6190
RNA type mRNA
GC content 0.52
exon number 30
gene id neo1a
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 4738083 ~ 4861628 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGGGCATGTTTTCCGGGAATCCGAGCTGAAGTCTGCCCTTTCCACGCCGCTGTTGCGCTCTACTCAGCCGGGGCATTTTGCTCAGATTGCTCtcggggaagaaaaaaaaagaaaacacacacatacacacactttccgATCGTCTTTCTTTTCGGATCCTGTACTTCGTGGTGTCGCTGAGCTTCGTGTTTCGTCCCCGCGGCTCTGTGCAGTGAAGCGCTCCGCCGCCGGTATGGattgatgtgattttttttccgcCTCGCCAAGTTTTCGCTTCGGCCACCAGCTCCATGTTTCTCGGGGCGACTTTTCCGAAGTGACCGGCTCGCGGATGGTGTCGGAGGCGCGCagggtgaagtgtgtgttgggGAAAGTGTGAGGGAGAGGCTCGGGGCCGGATTTCAGCACGGACTCCGGgcagcttttctgttttgtgtgtgtgtgtgtgtgtgtgttgtttgttggAAAcgaaacaaacatttttgtttgaGCTGAAAGTGATGGCGGAGCGGGGAGCGCGCgtgctcctctctctcctctgcctcACCTCTGCGTGCTCGCTCGCGCCTGCACGCGCTCAGAAAGGCTCTGTCAAGAGGCACTTCAGTCCTTTCTGGTTCTCTGTGGAACCTTCGGATACGTTGGCGGTGAGGGGATCCCCTGCGTTACTCAACTGCTCCGTCTACAGTGAGCTCCCTGCCAAGGTGCACTGGAAGAAAGATGGTGTTTTGCTCAACCCAGACGATCGCAGGCAGGTCCTGCCCGACGGCTCGCTGCTCATCAGTTCCATCATGCACTCCAAACACAACAAACCCGACGAGGGCGTCTACCAGTGCGTGGCTACCATCGAGAACCTGGGCACGATCAGTAGCCGCACCGCCAGACTCAACGTAGCAGGTACACCTCGTTTCTCCGGGCAGCCCGAGGCGGCGTCTGTGCATCTCGGGGAGAGCTGGGTGCTCAGCTGTGAGGTCAATGCAGACTTGGTGAGCTTTATTCGCTGGGAACGTGATAAGGAGCCGGTGCCATTGGACCAGAGAGTGTACACATTACCCAGCGGTGCTCTGGTCATCAGCAACGCCACAGAGGTGGACGCAGGTCTGTACCGGTGTGTGCTGGAAAATGCAGGACCTACGAAGAACAGCGACGAGGCTGAGCTCCAGATCCTGCCTGAAACATGGGAGGTGCGCAAGCTGGAGTTCCTCAGGCAGCCAGGCTCTGTGTCCCGGGTGGTGGGGGAGAGTGTACTGCTCCCCTGTGTGGTGAGCGGATTCCCTGCAGCCTACGTTCGCTGGATGCGAGACGATAGAGTCATCGATGACAGTGACAACCGCTTTGAGCTGCTTGGCGCCAGTCTACAGATCTTTAACTTGACCGAAGAGGATGGTGGGATATACAGCTGCCTCGCGGACAATGCAAACGACTCCATTGAAGCCCGGGCTGAGCTCACAGTACAAGTTCCTCCACAGTTTCTGAAGAGACCAACCAACACTTACGCCCACGAGGCTACGGACATAGTGTTCGAATGCGAGGCGACTGGATCCCCTGCCCCCACCATCAAATGGGTTAAAAACGGGGACGCCGTGGTTCCTAGCGACTATTTCCGAATTCTAAAAGAGCAGAATCTGCAGGTGCAGGGCCTGGTGAAGACGGATGAGGGGTTTTATCAGTGTCTAGCCGAGAATGAAGTGGGCAACGTACAGGCCAGTGCTCAGCTCATCATTCTAGACCAAGCCACCCCCTCTCCCTCACCCACACTGATCCGTGCCACTGCTGACCATGTAACACCAGGCTCAGGAGGCAGCTCCGGCTCCAACCCCGGCCCTGGCCTTGGTCCTGGTCCCGTGCCCTCAGCCCCCCGTGATGTAGTGGCCTCTCTTGTCTCCACCCGCTTCATCAAGCTGACCTGGCGCCTGCCGCTCGAGCCACATGGCGATGACATCACTTACTCCGTCTACTACGGCCTGGAAGGCGCCAAAAGGGAGAGGACGGTGAACACTAGCCGGCCAGGTGAAATGCAGGTCACCATCCAGAACCTCAAGCCAGACACCAAGTACTCTTTTCGAGTGGTGGCGTACAATAAGCACGGCCGTGGAGAGAGTTCAGCGCCTCTGAAGGTCGCCACCCAGCCAGAAGTTCAAGTACCAGGACCTGCTCCCAACTTCCAAGCCGTGGTCCAGACCTCCACTTCAGTCAGCCTGAGCTGGGACAAACCCCTGACCGGCAATGGCGACATCCAGAACTACAGAGTATACTACATGGAGAAAAGCCTTGGCAATGAGAAGGACATTGAGGTTAGTGGACTCTCCTACACCATGTCTGGGCTGAAGAAGTTCACAGAGTACAACTTCAGAGTGGTGGCTTACAACAAGCACGGACCTGGAGTCTCCACAGATGATGTGTCAGTGCGGACTTACTCagatgTCCCCAGCGCAGCACCCCAGAACATGACCGTGGAGGTGGTAAACTCAAAGAGCATCATGGTGCGATGGCAACCCCCACCAGCCGACGCTCAAAACGGAGAGATCATTGACTACAAGATTCGCTACAAGAAGGGCACGAGGAAGAGCGAACCTTTGGAGATCACCTCAGGAAACCAGCTCAGCAAGCTCATAGATGgGTTGCAGCGTGGCACGGAGTACTCTGTGCGCGTGTCAGCCATAACTGTGAACGGCTCAGGCCCTGCAACAGACTGGGCCACTGCTGAGACCTTCGAGAGCGATTTGGACGAGTCCCGCGTCCCTGATGTGCCTGGTTCTTTACACGTCCGGCCGCTGGTGAACAGCATCGTAGTGAGCTGGTCTCCTCCAGAGAACCAGGACATCGTGGTTAGAGGTTACATCATAGGCTACGGAATCGGGAACCCTCATAGCCAAACCATTAAACTTGACTACAAACAAAGATATTACAACATCGAGAACCTTGATCCCAGCTCGCACTACGTGATCACGCTGAAAGCCTTCAACAACGTGGGTGAGGGCATCCCGGTGTACGAGAGTGCCCTCACACGACCCCAGACAGACCCCATAGACCCTGATGTTGATTTGTACGAACTTTTCCATCCTCCATACACTCCAGTACCAGACCCCATTCCCATGATGCCTCCCGTGGGCGTTCAGGCTTCAGTTCTGAGCCACGACACCATCAAAGTCACATGGGCTGACAACTCGCTGCCCAAGAACCAGAAAATCACGGATGCGCGCTACTACACAGTGCGCTGGAAGACCAACATACCAGCAAACACCAAGTTCAAGACGGCCAACACCACCAACCTGAGTCACATGGTGACAGGTCTGAAGCCCAACACTCTGTATGAATTCTCCGTCATGGTCACTAAAGGCAGGAAAACTAGCACATGGAGTATGACGGCTCATGGGACAACGTTAGAAGCCACGCCCAGTTCAGCCCCAAAAGACGTGACAGTGGTCAGTAAGGAGGGTCGTCCACGCACCATCATAGTCAACTGGCAGCCTCCTTCTGAAGCCAATGGCAAAATTACAGGTTACATTATCTACTACAGCACTGATGTAAATGCTGAGGTACATGACTGGGTGATTGAGCCGGTGGTGGGGAACCGACTCACCCATCAGATCCAGGAGCTGACCCTTGACACAGCATACTACTTTAAAATCCAGGCTCGCAACTCCAAGGGCATGGGGCCTATGTCTGAGGCAGTCCAGTTCCGCACTCTTAAAGCTGAATCATCTGACAAAATGGCTAATGACCAAGCTTCTGGGATACCCGGGAAACCAGGCCGAGCCGCTACACTAGACCCTGGTATTGGGAAATCAGGGATGCCTGGTAGTGAAAACCACATCCTGGTGATCGTCATCATCGTGTCCGTGGGAGGCTTCATCATCATCGCGTTGGTGGTGGGAGCTTTACTGTGCTCACGCCGCTCCACCTCCCAGCAAAAAAAGAAAAGGGCAGCCTGCAAGTCCAGCAATGGCTCGCACAAGTACAAAGGCAACTCTAAAGACCTCAAGCCACCTGATCTTTGGATCCACCATGAGCGCTTGGAGCTCAAACCCATCGATAAGTCACCTGAGCCCAATCCAGTCATGACGGACACCCCGATTCCACGTTCCTCCCAGGACATCACTCCTGTAGATGGCACCATGGACCCGATCCTCCAGAGACGCAATTCGTACCGTGGCCATGAGTCAGAGGAGAGCATGTCTACACTGGCAGGTCGTCGGGGAATGAGACCTAAAATGATGATGCCCTTTGATGCTCAGCCCCCTCAGCCCGTGATTAGCGCTCACCCCATCCATTCCCTTGATAACCATCACCACCATTATCACCTGGGCAGCCTGGCCTCCCCGACCCACAACTATCTGCAACACACGAGCAGCCCGCGGCCCCTCACCTCCTCCATCTCTTATCTAGACAGGGCCGAGTCACCAGAGTCAGTGAGAAACACTCCCACTACAGACCTGCTGCCTGCTTCAGCTCAGCCCTCCTGCTCCATCGATCACTCGGAGACTGACATCAGTTATCACAGCTCAGCAGCTGAGGACGAGCCGAGCTACAACCCCCCAACAGCACACGTGCGCCCCACACACCCTCTCAAGAGCTTCGCCGTGCCCTCTGTGCCCGCCCACGGCTCCACCTACGAGGGTGTCGCTTTGCCCAACACACCCCTGCTCTCTCAGACAGGTCCTCACTCGGTCAAGACCGCCTCCATCGGGACGCTGGGTAGGACGAGGACGCCAATGCCAGTAATCGTGCCCAACGCACCAGACGTGCCAGACAGCAGCAGAATGCTGGAGgaatgtgagagtaAGTACGAGAAGGACGAGCTGTCAGAGGAGATGGCCCACCTGGAGGGCTTAATGAAGGACCTAAACGCCATCACGACGGCCTGAGCACAATCCCTgcaccctaacacacacacacacatatacacacacacacatatacacacacacacacacacacacacacacacaccctacttTTATCCACAACCCGCCACGGCATGGACAGAGTTCTCAGTCCTTTACAGAACCGAATGagagaaaatgaacattttggCTTGCCTTGCTAACTCTCAGGAAGGAAATGGCCTTCGGTTAAAGGAGTGAAAAACATTTTGGGTACTGATTCCTTCGGGAacgtttcactttttttttgcttcggAGAACGCTGTTTGTTACCTTacgaatttaaaaaaaaaaaaaaggaagattaCAATATGCTGGTGTTCGTGCTGGTGCTCAAGGCACAATTTACAGTGTTTCATTTGTGCGTTTTTGTAtctctcgatctctctctctatatctctttatctatatatatttccaCCCGTTCCAGTGAGGTGAACATTGGACACTGTcccttttattttcataacatttttgTATTACGCATTTTGATTAAGCGACAGCGTTCCTTTTTGTATGTCATCTATTGTGccatgttgttattattttctatgtttttttgtattattttatatacatatacgcTTATAGATATGTATATAAGGTCAAAACTGcctcatatttttttcacaatagCAATGTTTTCAGAGGAAAGTGCATCAGCCTTACGGGTCTCCTATCTCTGAGACCCGACGCTCCGTTTTCTCTGGAGCTTGGATGGCGTGATGTTGATTTATCCTCGGTACGAAAAGATTTTTCCGAATGGGAGCTCCTTTCAGAATATTGCCTTACACTTCTGTCTGCACGGACACTCATCCTTCAAGGAGGGAAGCAAAAATCCACCGCTTGTGCGTCACCTGCCACTGTGATATACAGACTTGCTCTTGTATGGAGCTGCGAGATCATGGGTGCGCTGGCTGCTAGACTACGGCTTACATTCAGTTTCCTGTCGGGTGctctacagatttttttttttagcattaattCAACTTCATATGGACTGAAACGTGGAAACTGATGTTACACAGACATAGACACAGGAAAATGCAGTATACACATTCTCAGTATCAGTTTAAATTTTATGATGTGTTGTAGACACACACCGACACATCAGGATGTCAAGTGCAAATCTTCCGAACAGGACTCCCAGTGATcgttctttatttctttcctttttgttcCTCTCATGTAGCCATTTTATATGAAGAATTTcaatgtgaatgaaaaatgaataatgtggcAGTCTGGAAAAACCCGttggatgtcactgtggctgattctagcaaattaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K06766 NEO1; neogenin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208311 lncRNA downstream 1667 4732382 ~ 4736416 (-) True G176015
TU208248 lncRNA downstream 105298 4630348 ~ 4632785 (-) True G175967
TU208239 lncRNA downstream 115096 4622128 ~ 4622987 (-) True G175963
TU208186 lncRNA downstream 233762 4499478 ~ 4504321 (-) False lto1
TU208115 lncRNA downstream 438215 4298977 ~ 4299868 (-) True G175854
TU208726 lncRNA upstream 248486 5110114 ~ 5113268 (-) True G176336
TU208744 lncRNA upstream 442986 5304614 ~ 5407099 (-) True G176354
TU208989 lncRNA upstream 770198 5631826 ~ 5715020 (-) True G176556
TU209305 lncRNA upstream 1221200 6082828 ~ 6167802 (-) True G176817
TU209304 lncRNA upstream 1310570 6172198 ~ 6176354 (-) True G176816
XM_026930525.2 mRNA downstream 49505 4656606 ~ 4688578 (-) False pacsin3
XM_026930523.2 mRNA downstream 49507 4656606 ~ 4688576 (-) False pacsin3
XM_026930522.2 mRNA downstream 49507 4656606 ~ 4688576 (-) True pacsin3
XM_026930524.2 mRNA downstream 67852 4656606 ~ 4670231 (-) False pacsin3
XM_026930626.2 mRNA downstream 140310 4587003 ~ 4597773 (-) True zgc:153993
XM_026930860.2 mRNA upstream 46305 4907933 ~ 4919259 (-) True scamp2l
XM_034308991.1 mRNA upstream 61735 4923363 ~ 5032894 (-) False myo9aa
XM_034308996.1 mRNA upstream 61735 4923363 ~ 5032894 (-) False myo9aa
XM_034308995.1 mRNA upstream 61735 4923363 ~ 5032894 (-) False myo9aa
XM_034308992.1 mRNA upstream 61735 4923363 ~ 5032894 (-) False myo9aa
XR_003403708.1 other downstream 637657 4100371 ~ 4100426 (-) True LOC113536798
XR_003403707.1 other downstream 638232 4099795 ~ 4099851 (-) True LOC113536797
XR_003403699.1 other downstream 641313 4096714 ~ 4096770 (-) True LOC113536789
XR_003403709.1 other downstream 642821 4095207 ~ 4095262 (-) True LOC113536799
XR_003403701.2 other downstream 685316 4052589 ~ 4052767 (-) True LOC113536791
TU208693 other upstream 218189 5079817 ~ 5080895 (-) True G176307
TU208689 other upstream 277982 5139610 ~ 5190522 (-) False trip4
TU208736 other upstream 330336 5191964 ~ 5196818 (-) False trip4
trnai-uau_1 other upstream 428874 5290502 ~ 5290594 (-) True trnai-uau_1
trnai-uau_2 other upstream 452534 5314162 ~ 5314254 (-) True trnai-uau_2

Expression Profile