RNA id: XM_034308982.1


Basic Information

Item Value
RNA id XM_034308982.1
length 2235
RNA type mRNA
GC content 0.43
exon number 11
gene id LOC113527219
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 14600430 ~ 14611565 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGGCTCGGCGTGTGTGGCGTCATGAAGAAACATTCAATGCGGAAGTAGAGAAACTGCACAGATTTGGGGGAAATATTTCACTGAGAGAGGACGCTAAAGATTTTAAAACGCTGAACTTAAATATTTCGGCagtgtatttagtgtgtgtggAACAATGTAGTAGCCAGCAGGGAAACCTATAATATCTCCAGACCGTGTTTTCAGTATTTGAAGAGAGTGAAGTTCAGCTGTAACATCACGACTGCGATGGCTAATAGTAATTTACAGaAAGCCATTGACTTGGCCACCAAGGCTTCAGAGGAGGACAAGGCCAAAAACTACAAGGAAGCTTTGCGCCTCTATGAGCATTCTATTCAATACTTTCTACATGTGGTGAAGTACGATGCTCAGGGTGAAAAGGCCAAGCAAAGCATCAGGGCGAAGTGTACAGAGTATCTGGacagagctgagcagctgaAGGAATATCtgaaaaaggcagaaaagcaGCCACCTGCCAAGCCTGTCAAAGTGTCCAATGACAAAGGgaatgacagtgatgatggtgataattcAGAGAAGAAGAAATTGCAGAATCAGCTTCAAGGTGCCATTGTCATGGAGAAGCCAAACATTAAGTGGAGTGATGTTGCTGGCTTAGAAGGAGCCAAGGAGGCGCTGAAAGAGGCAGTCATTCTACCCATTAAATTTCCTCACCTTTTCACAGGAAAGAGAACTCCATGGAGAGGGATCTTGCTTTTTGGCCCTCCAGGTACAGGGAAATCATACCTGGCTAAAGCAGTGGCCACTGAGGCCAACAACTCAACCttcttctccatctcctcctctgATCTGGTGTCTAAATGGctgggagagagtgagaaATTGGTGAAGAACCTGTTTAGCTTGGCTCGGCAAAACAAACCCTCCATCATCTTCATCGACGAGATCGACTCTCTGTGTGGCTCCAGGAGTGATAACGAGAGTGAAGCAGCTCGCCGAATAAAGACGGAGTTCCTGGTCCAGATGCAAGGTGTTGGAAATGATAATGAGGGAATTCTGGTGCTTGGAGCAACCAATATACCTTGGACTTTAGATTCTGCCATCAGAAGAAGGTTTGAGAAGCGTATTTACATCCCACTTCCTGAGCAGCATGCACGATCGCTCATGTTCAAGCTCAACCTCGGTACAACCCCCAACAGCCTCACCGATAATGACTTCATCACGCTAGGACAGAAGACCGAGCACTATTCAGGCGCCGACATCAGCATCATTGTCAGGGACGCTCTCATGCAGCCCATCCGCAAAGTACAGTCGGCCACTCACTTCAAAAAGGTCCGTGGAAAAACTTGGAACAACCAGGATGTAATAGCGGATGACTTATTGACCCCTTGCTCTCCAAGTGACCCAAACGCGATAAAGATGACGTGGGTAGATGTGGAAGCTGATAAACTCCTGGAGCCCATCGTCAGCATGGAGGACATGCTCAGGTCACTGGAAAAAACCAAGCCCACTGTGAATGAGGAAGACCTGAAGAAGCTGATGAAGTTTACTGAGGACTTCGGCCAAGAAGGCTAATTACACAGCaaccataaaacacaaaaaaacaaggacCTTTGTGTTATGCTTTTTACATTCCATTTTATCTTTCTACTGAgagtttattataaatacttttGTAATAATGGCCACTGTTTGTGGAATATAAGCTACATAATGTAGCTTGTTGAACTGCCTATCTACCTAATATGGTGTGAACCGGGAACTGAGatcatgtatttattgtatgtGGAAGTTATACTGGCGGGAATATTAAGCTGTAAGTTGGCACTTGAATAAGTATTGTAAATAGGCTTGGCCAGGAGATGGTAATTAATGATAGTGTCCTAGtttgaaaattttttatttagagatttagagaaaaaaaaaaattgagattttTGTCAGGttgaaatgataaatgatataaatgtaaaagtttgaAGAAGTTTGTGGGTTTATTTTAGTGACATGAGACATGACTTCCAAAATAGCACATTGATTTAAGGTGAGCTCTGTCTGTGTCGGTCTGTATGCGTGTGTCTGGGGTTCACCTCCTCACTCCCGTTTCACTCCTGACTGTAGACTGTTGTTTGTAGAGTGCTGTACAGAGCAGCAGTGAGGGAGACAATAGGCCAACTTTAGACAAAATGGATCACCATAACCTGCCATCCAATAGACAAATATGTGAACAGTACCTATAAAATACAGTTATGTTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K12196 VPS4; vacuolar protein-sorting-associated protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214585 lncRNA upstream 162421 14437375 ~ 14438009 (+) True G181300
TU214531 lncRNA upstream 190353 14409722 ~ 14410077 (+) True G181252
TU214515 lncRNA upstream 220957 14375493 ~ 14379473 (+) True G181236
TU214510 lncRNA upstream 239058 14360788 ~ 14361372 (+) True G181233
TU214415 lncRNA upstream 359895 14222251 ~ 14240535 (+) False LOC113531387
TU214732 lncRNA downstream 11071 14622636 ~ 14622971 (+) False si:dkey-121a11.3
TU214730 lncRNA downstream 36050 14647615 ~ 14649626 (+) False si:dkey-121a11.3
TU214795 lncRNA downstream 53136 14664701 ~ 14665064 (+) True G181475
TU214912 lncRNA downstream 256362 14867927 ~ 14930862 (+) True G181588
TU214923 lncRNA downstream 349320 14960885 ~ 14977551 (+) True G181599
XM_026927929.2 mRNA upstream 451 14589880 ~ 14599979 (+) True ankrd29
XM_034308502.1 mRNA upstream 37420 14561555 ~ 14563010 (+) False LOC113540185
XM_034308501.1 mRNA upstream 37420 14561556 ~ 14563010 (+) True LOC113540185
XM_026936524.2 mRNA upstream 37420 14561573 ~ 14563010 (+) False LOC113540185
XM_026923484.2 mRNA upstream 112618 14481557 ~ 14487812 (+) True mydgf
XM_026920060.2 mRNA downstream 10978 14622543 ~ 14649685 (+) False si:dkey-121a11.3
XM_026917034.2 mRNA downstream 59316 14670881 ~ 14672730 (+) True ier5
XM_026928780.2 mRNA downstream 85018 14696583 ~ 14704088 (+) True tal1
XM_026920401.2 mRNA downstream 97362 14708927 ~ 14711727 (+) True pdzk1ip1
XM_026945146.2 mRNA downstream 226932 14838497 ~ 14849100 (+) True tm2d1
TU214729 other upstream 5815 14589919 ~ 14594615 (+) False ankrd29
TU214656 other upstream 37464 14561690 ~ 14562966 (+) False LOC113540185
TU214440 other upstream 426212 14165026 ~ 14174218 (+) True G181175
TU214157 other upstream 1104445 13495590 ~ 13495985 (+) True G180936
TU214031 other upstream 1294714 13301255 ~ 13305716 (+) True G180834
XR_004579085.1 other downstream 10978 14622543 ~ 14646822 (+) True si:dkey-121a11.3
XR_004579090.1 other downstream 97362 14708927 ~ 14711727 (+) False pdzk1ip1
TU215983 other downstream 1643498 16255063 ~ 16255852 (+) False LOC113532318
XR_003403746.1 other downstream 1968671 16580236 ~ 16580303 (+) True LOC113537281
TU216336 other downstream 1971738 16583303 ~ 16584943 (+) True G182819

Expression Profile