RNA id: XM_034308996.1


Basic Information

Item Value
RNA id XM_034308996.1
length 7533
RNA type mRNA
GC content 0.53
exon number 42
gene id myo9aa
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 4923363 ~ 5032894 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCACGGTAAAGATGAGGCGCAGCAGTGATTAGTcggggaggagaaaaaaaaaaaaaaaaaaaaaaaagaaacacaggaCGCTggagaggaaagaaggaaagaagctCGTCATGTTAATATGCTAAgtgacaagaagaagaagaagaagaagaagtgataATGGTGTTTTGTGTTGAATTAAAAATGGCTCTGTGTCATGGGCTGTTTTGTCAGTTGGAAGTTCGCGCGAGGGAAAatttgtgaggaaaaaaaaaaaaattcgttGGGATATTTAAACAGGGGAGTCGCGAGCGCTGCTGATTTCACTCTCAGCTCACCGAGGAGGAGGACGCTGCTGCTACCTACTACGCGGAATAAAAACaggattttattcacatttttcacTTCGGGAAGcagtTGTGATGTCTTGAAGCATTCCCTGGGCCTTTTCtgaagcacacacacgcgctgAGAGCTGATGGGCCGAGCGGCTCCAACATGAGCATTCGCGATGTTGGCGGGCGGCGCCGCTGCTTCGAGGATGCCGAACTCTCGCTGCGTGTCTACCCCGGGGCAATCGCCGTGGGCACCATCTACTGCCCCATCTTGGCCCGCAAGAGAACTACAGCCGCAGAGGTCATCGAGCAGGTGATCGCTCGGCTGCGGCTGGACCGCACCAAATGCTATGTGCTGGCAGAGGTGAAGGAGTTCGGCGGCGAGGAATGGATCCTGAACCCGAGCGACTGTCCCGCTCAGCGCATGATGCTGTGGCCCCGCGCTGCGCTGGAGAACCGCTCGGGAAGCGAGGACTACCGCTTCCTGCTGCGCGAGAAGAACGTGGACGGTTCCATCCACTACGGCAACGTGGCCATGTGGCTGCAGTTGACGGAGGAGCGTCGGCGCATGGTGGAGCGTGGGCTGCTGCCTCCACCGCAGCTCCAGGACCACGACGATCTCTGCAAGCTGCCTGACCTGAGTGAGAAGACGCTGCTGGAGAACCTGCGCGCCCGCTTCAGGCAGGAGAAGATCTACACGTACGTGGGCAGCATCCTCGTCGCCATCAACCCCTTCAAGTTCCTGCCCGTCTACAACCCCAAATACGTCAAGATGTACGACAACCACCAGCTTGGGAAGCTGGAGCCGCACATCTACGCCGTGGCCGATGTGGCCTACCACGCCATGCTGAAACGGAAGCGCAACCAGTGCATCGTCATCTCCGGAGAGAGCGGCTCAGGAAAGACACAGAGCACCAACTTCCTCATCCATCATCTGACCGCTCTCAGTCAGAAGGGGTTCGCTAGCGGGGTGGAGCAGATCATTCTTGGAGCTGGGCCAGTGCTGGAGGCCTTTGGCAACGCGAAGACGGCCCACAATAACAACTCGAGCCGCTTCGGCAAGTTCATCCAAGTCAACTATCAAGAGAGCGGCACTGTCAGAGGCGCCTATGTGGAAAAGTACCTGCTAGAGAAGTCTCGGCTTGTCTATCAGGAGCACAACGAAAGGAACTACCATGTGTTTTACTACCTGCTGGCAGGCGCGAGCGAGGAGGAGAGGACGGCGTTCCACCTCCTCAAGCCTGAAGAATACCATTACCTCAGTCAGGACTGCTTCACAGTGGAAGGAGAGGATCTGAAGCATGACTTTGAGCGTCTGCAGCTGGCCATGGAGATGGTGGGGTTCCTGCCGGCCACACGAAAACAAATCTTTTCTCTGCTGTCAGCCATCCTTCATTTAGGCAACATCCGATATAAGAAGAAGACGTACCGGGATGACTCCATCGATATCTGCAATCCCGACGTTCTGCCCATCGTCTCAGAGCTGCTGGAGGTGAAAGAGGAGATGTTATTCGAAGCCCTGACGACGCGGAAGACAGTGACGGTGGGAGAAAAACTCATCGTGCCCTACAAACTGGCCGAGGCCGGAACTGTGCGTGACTCCATGGCTAAATCTCTGTACAGCGCTCTGTTCGACTGGATCGTGTTCAGAATCAATCACGCTCTGCTCAACAACCGAGAGCTGGAGGAGTCGGCCAAGATTTTATCCATTGGCGTCCTCGACATCTTTGGCTTCGAAGACTACGAGAACAACAGCTTTGAACAGTTTTGCATCAACTTCGCCAACGAGAGACTTCAGCATTATTTCAACCAGCACATCTTTAAGCTGGAGCAGGAAGAGTACAGGGCAGAGGGTATCACCTGGCATAACATAGATTACATCGACAACACGGGCTGCATCAACCTCATCAGCAAGAAGCCCACAGCGCTGCTCCACCTACTGGACGAGGAGTGCAACTTCCCACAGGCCACCAACCAGACGCTGCTGGACAAGTTCAAGCGGCAGCATGAGGGAAACAGCTACATCGAGTTTCCTGCCGTCATGGAGCCGGCCTTCATCATCAGACACTACGCTGGAAAGGTCAAGTACGGTGTGAAGGACTTCAGGGAGAAGAACACGGACCACATGCGGCCAGACATCGTAGCTCTGCTGAAGAGCAGCAGAAACGCCTTCATCGGTGGCCTGATCGGCATTGACCCGGTGGCTACGTTCCGCTGGGCCGTGCTGCGCGCTTACTGCAGAGCCGTGGTGGCCTTCAGGGAGGCGGGgaggagacacacagagaagaaGAGTGGGCATGATGCTGCCACTCCATGTGCAGTTTTGAAAAGTGTGGATAGTTTTAGCTTTCTGCATCACCCTGTGCATCAGAGAAGCTTAGAGATCCTGCAGAGGTGCAAGGAGGAGAAGTACAGTGTGAGCAGGAGGACTCCTCGCACGCCACTCTCCGACCTGCAGGGCAGCAACAACGAGCGCTCTAACCGGGATGGCAGGAACGGACGCTCTGGGAGACAAAGTCGACTGTCTTCCAGCGGCTCAATCGCCGATGAAGATGGGATCTTCATCAACTCTACCAGCAGCAAGCTCCTAGAGAGAGCCCATGGCATTCTGATGAGGaacaaaaactacaaaatgaAACCCAGTCTTCCAAAGCACCTGCTGGACGTGAAGTCCCTAAAGTACCTGAGCAACCTGACACTGCATGATCGCATCACCAAATCCCTGCTGCACCTCcacaagaagaagaaacctCCAAGTATTAGTGCCCAGTTTCAGGCATCTCTTAATAAGCTGATGGAGACTCTTGGCCAGTCCGAGCCCTACTTTGTGAAGTGCATCCGATCAAATGCAGAGAAGCTGCCCTTGAGATTTAACGACACTCTGGTGCTGAGGCAGCTTCGCTACACAGGCATGCTGGAGACTGTGCGCATCAGACAATCAGGCTACAGCATCAAATATACCTTtcagGAGTTTGTCCGGCACTTTCACGTGATGCTACCCGAGGACCTACAGGCCACGCAGGAGGACATCAGACACTACCTCTGCCAAGTGGACCTCGCTCCTGATGGCTTTCAAGTGGGCCGCACAATGgtGTTCATGCGTGAGGTGGCACGCCAGAGGCTGCAGGATCTGCTCCATCAGGAGGTGCTGCGGAGGATCGTCAATCTTCAGCGCCGTTTCCGAGCCGTGCGAGAGAGGAAGACTTTTCTCAGGATGAAACACGCCACCTGCCTCATACAGAACTGGTGGCGGAGCTGCCAGGCCAAGCAAAGAAATGAGCAGCTGAAGTATGACAATAATGTCAGACAGGGAGCGGCAATCTGCATTCAGTCAGCTTGGAGAGGTTTCCAAGAGCGCCGCAGATTCCTGCTATGGAAGGAAGCAGCAATGGTAATCCAAAGGAACTGGAGACTGTGCTGCTATAGACGCGTTCAAGCTGCTGTCGTGATCCAGGCTGCCTGGAGATGCTACAAGGCCAGAGAGCAGTATATCCACCAACGCAACATCATCATTCTCTTCCAAGTAGCATGTCGAGGCTATTTGGCAAGGCAGAGGTTCCGAGAACTGAGAGAGCAGAAGTTGAAGGACATGCAGCTGCTGAATGGACAAACAAGCCCATCTCCAGAGGAAGGAAAACTGAAAATCATGGGTCTGGATGTGAGCATGTGGGAGGACCGTTCTTACGAGGAGCGGGAGAGGAGCTTCCAGCGCCTCTGTGAGGTCGAGGCTCCTCAGGAGGAGCTGCATCAGAAGGATAAACAGATGCAAGGAGAAGAGGCAGATGCACAACTGCAAGCTCAAGTGGTGATCAGAGAGAGACCACGCCCATTTGATGACCCCAACCTGAAAACACGGGCCAAGAGGGAGAGCCGGCGTATCCGGGAGTTAGAGCAGGCCAAGTTTAGCCTGGAGCTGCTTAAGGTGCGTGCCACCGGAGGAACATCTCCTTCTGAGGACAGGCGCTGGTCAGTGGAGTTTGCCAATGATGGTGCCCTCTCGCCTCAAGGCACTCCAGATAGCCAAAGCTCTAAAGGAAGCTTTGAGCTGGTTAGTATGGATGACTATGCTAAAGAAAAAGTGCCATCTGATGAGGCTGGAGACCTTAACTCTTCATTTTCAGTACCACCCCAGCATGAAGTTCTTCCCAGCAGCCCCAAGCTTACATTTCCTCCTGAACCTCATGCACCTGCTGTTCTATCTAACAGTCCCAAAGATGAACCAGACAAGCTTCCTGCTTTGCCCAAACTGGAGAACTCTCTTCCTACTTTCTACATTCCTCCAGTAGAGAGCAGCTCTATATTTGCAAAGTCCAGTATAGATTTGTCCACCTCACAGAGTCCAGAAAAGCCAGTAAAGTCTTCCCGCAGACCAGTAGTGGTTGTGATTAGCATGCAGAAGGAAACCTTGCTTGATGCCACAGATTTGAAGCCCCCAGAAGTGAGAGACAGTTCTGCTCAGACCAGTGAGCCTCCCAGCCTGGCGCAGGGTGAAATCACCACCCGGTCCATGCTGGAGAGGCTCGAGAAGCTCAATGAGGCCAAACAGGAGCGGCAGaagcaccagcagcagcagaatgagAAGGAGATGATGGAGCAGATCCGGCAGCAGACAGAGATCCTGGAGAAACAACGCAAGCACTTTGCCCAgtttgagagagagatgtttgaGAAGCAGAGAGGCGAGGCCCTGCAGAGGATTGAGCAAAGTAGGCAAGAAAGATGCGGAAAGGCCACAGACAGAAGTCCTCCTATAGCACAGCCAGAGCCCGATCTCATCTCCTCGCTACCAACCCAAGACAAACAGGGTACGCCATCCAAAACAGGAGAAAGACCAAAGGACATACAGAATGTGTCAGATGGATGGTCCCCAAAACTCACCTTAGACTCTCAAGAAGGTGCTGCCAAAGAAGCCCGTAAGAAACCACCTACCTCAAGTGTCAACATTAACATGACTGAGCGACATGgagatatttttttctcaccCAAGGACAAGGTTTCCTTCTCAAAGTTTGAAAAGGAATTTACCGGTAGAGGGAAGTTGGCGGGAGTTCAGAAGGAGGCCAGAACCTCAGATATCAAATCCTTGAAGCCTCTGAAAGGTCGTgagGTTGCCAGACCAGGCCATAAAAAAGCCCGCATGGCGCGGACACGCTCAGACTTCCTGACCCGCGGTTCAAATCCTCCAGGGGAGGGGGAGTCAGAGGAGGAAGAGTATGAGGAGACCCCTCTGTCTCTTGGCCCACCCCTCCCCAAGCAGGACTCAGAGGGGGGGACACTAGACGCATGTCACAGTGACTCTGAAATGCCGTCCACATCCAATGAAGAGCAAAAGCGGTTGATGTATAAAGTTATGTCTTCTGGGGACCTTGGCAAGAGTGACTCCCTGAGAAAGATTTCACACGGAGATGGAAGggTTCGGGGCAAGATGCGGTTCTGGGGAAAGACAAAGCAGGGAGAGAAGAAATCATCCAGAGATAGACTGATGTATACCGGTGAGTCTCTAGACGGGGACTATCCTGATACCGCACTCCTCATGGCTGAAGgggaGTGCTTGTCCCCTCCTCACAGCCCTGACTTCAGCTCCCTGCCAGAGTTCAAGGAGAACAAGGAGCCCTCGCCCAAAATGAAGCGGCGCCGCAGCGTGAAGATCAGCAGCGTGGCTCTAGAGCCCGCCCAGTGGCAGAACGACGCACTGCAGATCCTCACATGCGCCAATGACTACAGGAGTATGAACGAGTTCCTCATGAAGAAGATTGGTGATCTAGACACTGAGGACAGTAAGAAAGACACAATGGTGGATGTTGTGTTTAAAAAGGCACTGAAGGAATTCCGCATGAACATTTTCGACTCCTATTCCACCGCTTTGGCCATGGATGATGGGAAGAGTATCCGCTATAAAGACCTGCACGCACTGTTCGAGCAGATCTTGGAGAAGACCATGCGTCAGGAGCAGAGAGACTGGAGCGAGTCGCCTGTTCGAGTTTGGGTGAACACCTTCAAAGTGTTCTTAGATGAGTTCATGACTGAGTACAAGCCGCTGGACAGCAGCATGAACAAGGTCATCAAGCCAGATcgaaagaagaggaggaagaaggacACTGACATTgtAGAGGAACATAATGGCCACATCTTCAAGTCCACTCAGTACAGCATCCCAACCTACTGCGAGTATTGCTCTTCCCTCATCTGGATGATGGACAGAGCGTGTGTTTGCAAACTGTGCCGATATGCTTGCCACAGAAAATGCTGTCTGAAGACAATCAGCAAGTGTAGCAAGAAGTATGATCCTGAGCTATCATCAAGGCAGTTTGGTGTGGATGTCTCCCGTTTGACCCATGATGACCGCTCGGTACCTCTGGTAGTAGAGAAACTCATTAACTATATCGAGATGCATGGCCTCTACACAGAAGGCATCTACAGGAAATCTGGCTCCGCCAATAAAATCAAGGAACTGAAACAGGGTCTAGACACAGATGTGAGCAGTACAAACTTGGACGACTACAACATCCATGTCATCGCCAGCGTTTTCAAGCAGTGGCTGCGTGATTTGCCCAATCCCCTTATGACCTTTGAACTGTATGAGGAATTTTTAAGAGCCATGGGCCTTCAAGACAAAAAGGAGGTGGTACGAGGGGTGTACTCTGTTATCGATCAGCTCAGCAGAACTCACCTGAACACGCTGGAAAGGCTCATCTTCCACTTGGTCAGGATTGCTCAGCAAGAAGAGACCAACCGGATGTCCGCCAACGCACTGGCTATTGTCTTTGCTCCCTGTATCTTGCGGTGCCCCGACACGATTGACCCCCTGCAGAGTGTTCAGGACATCAGCAAAACCACAGCatGTGTAGAACTGATCATTTGCGAGCAGATGAACAAGTACAAAGCCCGGCTAAAGGACATCAACACACTGGAGTTTGCTGAGAGTAAAGCAAAGAGCCGTCTGACGCTCATTCGCAGGTCTATGAAGCCCGTAGTAATTGCAGTTAGGTTTATGAGCATAACCCGCAGTGCAGCGGTGTCCAGTGCAGCAAGAAAGGGTAAGGGGCCGACCACGTAAGCTTGACTATCACTCACCATCTCCTCCGGTGAGTCCTCGCTCTCCCTCTGCCCCCGAGATTATGGAGGAGAGCGGAGACGAGGACAACATGAGAGACGCCGAGGTGACAGAGCAGCAGCATGTCGCCATGCAGCAAGAAGAAAGAGTGCTGACCGAACAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208332 lncRNA downstream 76222 4840748 ~ 4847141 (-) True G176029
TU208331 lncRNA downstream 82670 4839988 ~ 4840693 (-) True G176028
TU208311 lncRNA downstream 186947 4732382 ~ 4736416 (-) True G176015
TU208248 lncRNA downstream 290578 4630348 ~ 4632785 (-) True G175967
TU208239 lncRNA downstream 300376 4622128 ~ 4622987 (-) True G175963
TU208726 lncRNA upstream 77220 5110114 ~ 5113268 (-) True G176336
TU208744 lncRNA upstream 271720 5304614 ~ 5407099 (-) True G176354
TU208989 lncRNA upstream 598932 5631826 ~ 5715020 (-) True G176556
TU209305 lncRNA upstream 1049934 6082828 ~ 6167802 (-) True G176817
TU209304 lncRNA upstream 1139304 6172198 ~ 6176354 (-) True G176816
XM_026930860.2 mRNA downstream 4104 4907933 ~ 4919259 (-) True scamp2l
XM_034308979.1 mRNA downstream 61735 4738083 ~ 4861628 (-) True neo1a
XM_026930523.2 mRNA downstream 234787 4656606 ~ 4688576 (-) False pacsin3
XM_026930658.2 mRNA upstream 14457 5047351 ~ 5074302 (-) True gramd2aa
XM_026930656.2 mRNA upstream 14457 5047351 ~ 5067486 (-) False gramd2aa
XM_026930655.2 mRNA upstream 14457 5047351 ~ 5067484 (-) False gramd2aa
XM_026930659.2 mRNA upstream 14457 5047351 ~ 5067480 (-) False gramd2aa
XM_034308867.1 mRNA upstream 17165 5050059 ~ 5067491 (-) False gramd2aa
XR_003403708.1 other downstream 822937 4100371 ~ 4100426 (-) True LOC113536798
XR_003403707.1 other downstream 823512 4099795 ~ 4099851 (-) True LOC113536797
XR_003403699.1 other downstream 826593 4096714 ~ 4096770 (-) True LOC113536789
XR_003403709.1 other downstream 828101 4095207 ~ 4095262 (-) True LOC113536799
XR_003403701.2 other downstream 870596 4052589 ~ 4052767 (-) True LOC113536791
TU208693 other upstream 46923 5079817 ~ 5080895 (-) True G176307
TU208689 other upstream 106716 5139610 ~ 5190522 (-) False trip4
TU208736 other upstream 159070 5191964 ~ 5196818 (-) False trip4
trnai-uau_1 other upstream 257608 5290502 ~ 5290594 (-) True trnai-uau_1
trnai-uau_2 other upstream 281268 5314162 ~ 5314254 (-) True trnai-uau_2

Expression Profile