Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003402980.2 |
| length | 536 |
| lncRNA type | inter_gene |
| GC content | 0.52 |
| exon number | 3 |
| gene id | LOC113528706 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047605.1 |
| NCBI id | CM018551.1 |
| chromosome length | 26640196 |
| location | 21237304 ~ 21248130 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU219486 | lncRNA | upstream | 152605 | 21077175 ~ 21084699 (+) | False | G185439 |
| TU219480 | lncRNA | upstream | 152605 | 21078672 ~ 21084699 (+) | False | G185439 |
| TU219481 | lncRNA | upstream | 152605 | 21078672 ~ 21084699 (+) | False | G185439 |
| TU219491 | lncRNA | upstream | 152605 | 21078672 ~ 21084699 (+) | False | G185439 |
| TU219472 | lncRNA | upstream | 177076 | 21059064 ~ 21060228 (+) | True | G185436 |
| TU219537 | lncRNA | downstream | 13445 | 21261575 ~ 21262176 (+) | False | si:dkey-28e7.3 |
| TU219490 | lncRNA | downstream | 79124 | 21327254 ~ 21339714 (+) | False | G185439 |
| TU219483 | lncRNA | downstream | 79307 | 21327437 ~ 21339714 (+) | False | G185439 |
| TU219484 | lncRNA | downstream | 79307 | 21327437 ~ 21339714 (+) | False | G185439 |
| TU219485 | lncRNA | downstream | 79307 | 21327437 ~ 21339714 (+) | False | G185439 |
| XM_026912525.2 | mRNA | upstream | 31065 | 21200218 ~ 21206239 (+) | True | cdc6 |
| XM_034308923.1 | mRNA | upstream | 38829 | 21189248 ~ 21198475 (+) | False | wipf2a |
| XM_026930296.2 | mRNA | upstream | 38830 | 21189786 ~ 21198474 (+) | True | wipf2a |
| XM_026928883.2 | mRNA | upstream | 50240 | 21174029 ~ 21187064 (+) | True | si:ch211-69b7.6 |
| XM_026928890.2 | mRNA | upstream | 50240 | 21174029 ~ 21187064 (+) | False | si:ch211-69b7.6 |
| XM_026917326.2 | mRNA | downstream | 4015 | 21252145 ~ 21265055 (+) | True | si:dkey-28e7.3 |
| XM_026936635.2 | mRNA | downstream | 22329 | 21270459 ~ 21277952 (+) | True | krt99 |
| XM_026921674.2 | mRNA | downstream | 42304 | 21290434 ~ 21292917 (+) | True | krt15 |
| XM_026916820.2 | mRNA | downstream | 72961 | 21321091 ~ 21324269 (+) | True | krt94 |
| XM_026935643.2 | mRNA | downstream | 91813 | 21339943 ~ 21344414 (+) | True | c11h6orf120 |
| XR_004579103.1 | other | upstream | 26765 | 21189786 ~ 21210539 (+) | False | wipf2a |
| TU218923 | other | upstream | 1086410 | 20149971 ~ 20150894 (+) | True | G184979 |
| XR_003403385.2 | other | upstream | 1365841 | 19865798 ~ 19871463 (+) | True | ccl44 |
| XR_004579107.1 | other | upstream | 1402890 | 19827986 ~ 19834414 (+) | False | tax1bp3 |
| TU218602 | other | upstream | 1537030 | 19695244 ~ 19700274 (+) | True | rps15 |
| trnap-agg_1 | other | downstream | 710758 | 21958888 ~ 21958959 (+) | True | trnap-agg_1 |
| trnaq-uug_2 | other | downstream | 2684736 | 23932866 ~ 23932937 (+) | True | trnaq-uug_2 |
| trnaq-cug_11 | other | downstream | 2686002 | 23934132 ~ 23934203 (+) | True | trnaq-cug_11 |
| trnaq-uug_3 | other | downstream | 2686505 | 23934635 ~ 23934706 (+) | True | trnaq-uug_3 |
| trnaq-uug_4 | other | downstream | 2688887 | 23937017 ~ 23937088 (+) | True | trnaq-uug_4 |
