RNA id: XR_003403681.2


Basic Information

Item Value
RNA id XR_003403681.2
length 403
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id LOC113536470
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7415941 ~ 7417038 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGATCTTTACACTTTGCGGTGTcgcagtaacatgacaagctccagtttttgtcttattacttcaagagagaggaaaagacacGCTGAAACAAATTCATCAAATATGTGGAAAAATTCCAATCTAATCCATGTCAAGACAGTATGTTGCATCAAATGCAGGACTAAGGACCAAAAGAAGAACCTTCTTCTCATCAGTATTTCATCAGGACAGGGATGCTGCAGAATGATGGATTTCTAGGAGACACAGCAGCCCACAGGGCTAGAGCCACCTTCCTCCTGTTCCTGATAAGAGCTGGCATACTGGGCCAAAAGTGCCAGAAGTCCTGCTGCCCTCAAACAACCTAATCTTATCTCAGTCTTACTGCAggtattaaacacacatacgcatACTGTAcgtgtaca

Function

GO: NA

KEGG:

id description
ko00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210110 lncRNA downstream 1756 7413967 ~ 7414185 (-) True G177491
TU210088 lncRNA downstream 40706 7375027 ~ 7375235 (-) True G177469
TU210078 lncRNA downstream 122771 7292917 ~ 7293170 (-) True G177459
TU210074 lncRNA downstream 125849 7289885 ~ 7290092 (-) True G177455
TU210062 lncRNA downstream 144670 7267561 ~ 7271271 (-) True G177448
TU210159 lncRNA upstream 5985 7423023 ~ 7423276 (-) True G177539
TU210167 lncRNA upstream 23141 7440179 ~ 7440388 (-) True G177547
TU210170 lncRNA upstream 24853 7441891 ~ 7442395 (-) True G177550
TU210179 lncRNA upstream 53936 7470974 ~ 7471210 (-) True G177559
TU210182 lncRNA upstream 62120 7479158 ~ 7479388 (-) True G177562
XM_034308645.1 mRNA downstream 61611 7296707 ~ 7354330 (-) True strn
XM_026930513.2 mRNA downstream 61889 7296707 ~ 7354052 (-) False strn
XM_026930841.2 mRNA downstream 163348 7248348 ~ 7252593 (-) True cfap410
XM_026930817.2 mRNA downstream 213077 7192255 ~ 7202864 (-) False si:dkey-93h22.8
XM_026930816.2 mRNA downstream 213077 7192255 ~ 7202864 (-) True si:dkey-93h22.8
XM_026930318.2 mRNA upstream 17281 7434319 ~ 7437490 (-) True irf2bp2b
XM_026930317.2 mRNA upstream 63384 7480422 ~ 7484117 (-) True si:dkey-56d12.4
XM_026930575.2 mRNA upstream 75463 7492501 ~ 7500900 (-) True rbm34
XM_034308740.1 mRNA upstream 98209 7515247 ~ 7547820 (-) True nid1a
XM_026930582.2 mRNA upstream 147342 7564380 ~ 7577840 (-) False ero1b
TU209010 other downstream 1707676 5696458 ~ 5708265 (-) True LOC113536561
TU209012 other downstream 1707676 5696458 ~ 5708265 (-) False LOC113536561
trnai-uau_2 other downstream 2101687 5314162 ~ 5314254 (-) True trnai-uau_2
trnai-uau_1 other downstream 2125347 5290502 ~ 5290594 (-) True trnai-uau_1
TU208736 other downstream 2219123 5191964 ~ 5196818 (-) False trip4
TU210154 other upstream 64411 7481449 ~ 7483958 (-) False si:dkey-56d12.4
XR_004579066.1 other upstream 163396 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579065.1 other upstream 163396 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579064.1 other upstream 163396 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579063.1 other upstream 163396 7580434 ~ 7588815 (-) True si:ch1073-365p7.2

Expression Profile