RNA id: XR_003403710.1


Basic Information

Item Value
RNA id XR_003403710.1
length 130
RNA type ncRNA
GC content 0.45
exon number 1
gene id LOC113536800
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 11418114 ~ 11418243 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCTTCTCATGAGCTCCTCTCTGTGTGATGGTGACAGAGCATGGATTCGCACGAGAAGTAGATTGACACTCACATTTATACGAGTCTCTCCTCTATGATGGGAGTTGCTTATGTCTGATGTGAGACAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212671 lncRNA upstream 10700 11404359 ~ 11407414 (+) True G179753
TU212674 lncRNA upstream 16680 11400924 ~ 11401434 (+) True G179754
TU212604 lncRNA upstream 222427 11194836 ~ 11195687 (+) True G179696
TU212593 lncRNA upstream 254735 11163021 ~ 11163379 (+) True G179685
TU212553 lncRNA upstream 263351 11152149 ~ 11154763 (+) True G179648
TU212682 lncRNA downstream 10370 11428613 ~ 11430897 (+) True G179758
TU212705 lncRNA downstream 53103 11471346 ~ 11473207 (+) True G179773
TU212710 lncRNA downstream 55325 11473568 ~ 11475147 (+) True G179775
TU212715 lncRNA downstream 60105 11478348 ~ 11530003 (+) True G179779
TU212723 lncRNA downstream 98504 11516747 ~ 11518939 (+) True G179786
XM_026930646.2 mRNA upstream 15150 11395207 ~ 11402964 (+) False ppp1r2
XM_026930645.2 mRNA upstream 15151 11395208 ~ 11402963 (+) True ppp1r2
XM_026930287.2 mRNA upstream 25168 11384806 ~ 11392946 (+) True alpi.2
XM_034308527.1 mRNA upstream 38119 11360964 ~ 11379995 (+) True alpi.1
XM_026930852.2 mRNA upstream 236260 11176097 ~ 11181854 (+) True b3gnt7
XM_026930520.2 mRNA downstream 28710 11446953 ~ 11457408 (+) True htr2b
XM_026930521.2 mRNA downstream 28710 11446953 ~ 11457408 (+) False htr2b
XM_026930554.2 mRNA downstream 133283 11551526 ~ 11562360 (+) True ttc14
XM_026930536.2 mRNA downstream 437376 11855619 ~ 11861835 (+) True dnajc19
XM_034308815.1 mRNA downstream 482153 11900396 ~ 11958703 (+) True atp11b
XR_004579127.1 other upstream 5474 11412574 ~ 11412640 (+) True LOC117598448
XR_003403700.1 other upstream 5987 11412060 ~ 11412127 (+) True LOC113536790
TU212545 other upstream 256517 11160386 ~ 11161597 (+) True G179643
TU212547 other upstream 256897 11160386 ~ 11161217 (+) False G179643
TU212546 other upstream 256989 11160346 ~ 11161125 (+) False G179643
TU212683 other downstream 10370 11428613 ~ 11429339 (+) False G179758
TU213106 other downstream 636715 12054958 ~ 12055749 (+) True G180121
TU213163 other downstream 909823 12328066 ~ 12333631 (+) False timm13
trnag-ucc_15 other downstream 969927 12388170 ~ 12388241 (+) True trnag-ucc_15
TU213294 other downstream 1154950 12573193 ~ 12602064 (+) False LOC117598398