RNA id: XR_004579057.1


Basic Information

Item Value
RNA id XR_004579057.1
length 309
lncRNA type inter_gene
GC content 0.44
exon number 4
gene id LOC117598394
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 26429135 ~ 26436719 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aagctgctctctgatctactgaaggatccacactgtaaactagagacactacaCATTGAGTCATACTTCCCCACTAGGATGGGCATATAACAGGAGTCTCACTTCAGACCACTTTTGGAGGATAAAGCAGCTACATaatgatgaagagaaagagatcagactcaccagaacccagctgtgtgtccatgaagagtgacgcgTCAATGGATCCACCAATActcttcagagacagagacagttctactgatgtgagatcacaaaagaagaaatcaaacatcaacagaagtcagttggagtccatattcacgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579058.1 lncRNA upstream 7636 26420374 ~ 26421499 (+) True LOC117598395
XR_004579054.1 lncRNA upstream 8762 26419606 ~ 26420373 (+) True LOC117598393
TU222764 lncRNA upstream 206214 26218931 ~ 26222921 (+) True G188202
TU222766 lncRNA upstream 206214 26220435 ~ 26222921 (+) False G188202
TU222739 lncRNA upstream 264379 26162308 ~ 26164756 (+) False G188184
TU222980 lncRNA downstream 9260 26445979 ~ 26450419 (+) True LOC117598392
XR_004579053.1 lncRNA downstream 9375 26446094 ~ 26447422 (+) False LOC117598392
TU222987 lncRNA downstream 71320 26508039 ~ 26511407 (+) False LOC117598392
TU223005 lncRNA downstream 84694 26521413 ~ 26571083 (+) False G188396
TU223006 lncRNA downstream 84694 26521413 ~ 26574817 (+) True G188396
XM_034308579.1 mRNA upstream 34 26421913 ~ 26429101 (+) True LOC113524564
XM_026910874.2 mRNA upstream 77100 26260530 ~ 26352035 (+) True syt7b
XM_034308580.1 mRNA downstream 54398 26491117 ~ 26491773 (+) True LOC117598404
XM_026910145.2 mRNA downstream 77831 26514550 ~ 26517299 (+) True rplp2l
XM_034308820.1 mRNA downstream 127582 26564301 ~ 26566306 (+) True LOC117598415
TU222884 other upstream 110560 26260677 ~ 26318575 (+) False syt7b
TU222713 other upstream 217026 26185862 ~ 26212109 (+) False polr2l
TU222712 other upstream 217026 26210559 ~ 26212109 (+) False polr2l
TU222716 other upstream 219125 26206942 ~ 26210010 (+) True G188164
TU222375 other upstream 835632 25531745 ~ 25593503 (+) False LOC113523924

Expression Profile