Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579067.1 |
| length | 418 |
| lncRNA type | inter_gene |
| GC content | 0.51 |
| exon number | 4 |
| gene id | LOC117598400 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047605.1 |
| NCBI id | CM018551.1 |
| chromosome length | 26640196 |
| location | 6579004 ~ 6589296 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU209513 | lncRNA | downstream | 27422 | 6551325 ~ 6551582 (-) | True | G176991 |
| TU209514 | lncRNA | downstream | 27742 | 6550914 ~ 6551262 (-) | True | G176992 |
| TU209512 | lncRNA | downstream | 33934 | 6543999 ~ 6545070 (-) | True | G176990 |
| TU209473 | lncRNA | downstream | 119373 | 6458366 ~ 6459631 (-) | True | G176959 |
| TU209451 | lncRNA | downstream | 220917 | 6357574 ~ 6358087 (-) | True | G176938 |
| TU209633 | lncRNA | upstream | 149025 | 6738321 ~ 6738608 (-) | True | G177097 |
| TU209925 | lncRNA | upstream | 269243 | 6858539 ~ 6859489 (-) | False | LOC113536608 |
| TU209973 | lncRNA | upstream | 469236 | 7058532 ~ 7059550 (-) | True | G177374 |
| TU210004 | lncRNA | upstream | 548333 | 7137629 ~ 7138904 (-) | True | G177404 |
| XR_004579109.1 | lncRNA | upstream | 566932 | 7156228 ~ 7157621 (-) | True | LOC117598441 |
| XM_034308556.1 | mRNA | downstream | 11247 | 6555719 ~ 6567757 (-) | True | ctr9 |
| XM_026930872.2 | mRNA | downstream | 117178 | 6358137 ~ 6461826 (-) | True | galnt18b |
| XM_026930590.2 | mRNA | downstream | 282128 | 6227094 ~ 6296876 (-) | True | LOC113536569 |
| XM_026930304.2 | mRNA | downstream | 469632 | 6100029 ~ 6109372 (-) | False | LOC113536415 |
| XM_026930303.2 | mRNA | downstream | 469660 | 6100029 ~ 6109344 (-) | True | LOC113536415 |
| XM_034308784.1 | mRNA | upstream | 32608 | 6621904 ~ 6643123 (-) | False | ampd3a |
| XM_034308786.1 | mRNA | upstream | 32608 | 6621904 ~ 6643116 (-) | False | ampd3a |
| XM_034308783.1 | mRNA | upstream | 32608 | 6621904 ~ 6643105 (-) | False | ampd3a |
| XM_034308782.1 | mRNA | upstream | 32608 | 6621904 ~ 6643105 (-) | True | ampd3a |
| XM_034308785.1 | mRNA | upstream | 32608 | 6621904 ~ 6643051 (-) | False | ampd3a |
| TU209010 | other | downstream | 870739 | 5696458 ~ 5708265 (-) | True | LOC113536561 |
| TU209012 | other | downstream | 870739 | 5696458 ~ 5708265 (-) | False | LOC113536561 |
| trnai-uau_2 | other | downstream | 1264750 | 5314162 ~ 5314254 (-) | True | trnai-uau_2 |
| trnai-uau_1 | other | downstream | 1288410 | 5290502 ~ 5290594 (-) | True | trnai-uau_1 |
| TU208736 | other | downstream | 1382186 | 5191964 ~ 5196818 (-) | False | trip4 |
| TU210154 | other | upstream | 892153 | 7481449 ~ 7483958 (-) | False | si:dkey-56d12.4 |
| XR_004579066.1 | other | upstream | 991138 | 7580434 ~ 7588815 (-) | False | si:ch1073-365p7.2 |
| XR_004579065.1 | other | upstream | 991138 | 7580434 ~ 7588815 (-) | False | si:ch1073-365p7.2 |
| XR_004579064.1 | other | upstream | 991138 | 7580434 ~ 7588815 (-) | False | si:ch1073-365p7.2 |
| XR_004579063.1 | other | upstream | 991138 | 7580434 ~ 7588815 (-) | True | si:ch1073-365p7.2 |
