RNA id: XR_004579068.1


Basic Information

Item Value
RNA id XR_004579068.1
length 444
lncRNA type inter_gene
GC content 0.50
exon number 4
gene id LOC117598400
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 6579004 ~ 6589296 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGCTCTCATCGTGACATGAGTTTCCTGCTTGAAggatgtgctgatgtggtgccttcgctttctgtcaagCTACTGCCGTGCACTCTCTCGCCCAACACTCCAGCAAACTAGCAGCTGAAGAATGACTGTGTCCTGTGTACCATCGCATGCCTGTTTATACCCTGCTCCCTCTTTACGACGagacactacagGTGCCTCCAACCTGTGAACAGCGTCAAGATCCTCTCAGTTGTCCTGTTATAACTACTAGCCAAGCAATCTGGGAGAATCACCCATGTTTTTCCCGACATCTTTGTTAGAACTCTGCTAGATGTCAATCAACCTTCAGATCAGAGAAAGAACATCACACCAGAGGACATACCTTTGAGCAGGAGGAAACCCGAGCCTCCAGTCCCCTCAGCTGGTTCTCCGTATCTGCTGTTCTGCTCAGAGCTTCCTCCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209513 lncRNA downstream 28778 6551325 ~ 6551582 (-) True G176991
TU209514 lncRNA downstream 29098 6550914 ~ 6551262 (-) True G176992
TU209512 lncRNA downstream 35290 6543999 ~ 6545070 (-) True G176990
TU209473 lncRNA downstream 120729 6458366 ~ 6459631 (-) True G176959
TU209451 lncRNA downstream 222273 6357574 ~ 6358087 (-) True G176938
TU209633 lncRNA upstream 149025 6738321 ~ 6738608 (-) True G177097
TU209925 lncRNA upstream 269243 6858539 ~ 6859489 (-) False LOC113536608
TU209973 lncRNA upstream 469236 7058532 ~ 7059550 (-) True G177374
TU210004 lncRNA upstream 548333 7137629 ~ 7138904 (-) True G177404
XR_004579109.1 lncRNA upstream 566932 7156228 ~ 7157621 (-) True LOC117598441
XM_034308556.1 mRNA downstream 12603 6555719 ~ 6567757 (-) True ctr9
XM_026930872.2 mRNA downstream 118534 6358137 ~ 6461826 (-) True galnt18b
XM_026930590.2 mRNA downstream 283484 6227094 ~ 6296876 (-) True LOC113536569
XM_026930304.2 mRNA downstream 470988 6100029 ~ 6109372 (-) False LOC113536415
XM_034308784.1 mRNA upstream 32608 6621904 ~ 6643123 (-) False ampd3a
XM_034308786.1 mRNA upstream 32608 6621904 ~ 6643116 (-) False ampd3a
XM_034308783.1 mRNA upstream 32608 6621904 ~ 6643105 (-) False ampd3a
XM_034308782.1 mRNA upstream 32608 6621904 ~ 6643105 (-) True ampd3a
XM_034308785.1 mRNA upstream 32608 6621904 ~ 6643051 (-) False ampd3a
TU209010 other downstream 872095 5696458 ~ 5708265 (-) True LOC113536561
TU209012 other downstream 872095 5696458 ~ 5708265 (-) False LOC113536561
trnai-uau_2 other downstream 1266106 5314162 ~ 5314254 (-) True trnai-uau_2
trnai-uau_1 other downstream 1289766 5290502 ~ 5290594 (-) True trnai-uau_1
TU208736 other downstream 1383542 5191964 ~ 5196818 (-) False trip4
TU210154 other upstream 892153 7481449 ~ 7483958 (-) False si:dkey-56d12.4
XR_004579066.1 other upstream 991138 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579065.1 other upstream 991138 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579064.1 other upstream 991138 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579063.1 other upstream 991138 7580434 ~ 7588815 (-) True si:ch1073-365p7.2

Expression Profile