RNA id: XR_004579109.1


Basic Information

Item Value
RNA id XR_004579109.1
length 504
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id LOC117598441
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7156228 ~ 7157621 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGCGCGCAGGTCACGGCACCTTGCCTGCACGCTCACGTGACACGTCACTGCTTCTGCCTGCGCGTGAATGCCTGTGCGCGCGCAGGTCACGGCCCCTTGTCTACACGCTCATTTGACACGTCACTTTTTGAACGCGGAACGAATTTAAAGTGTTgggaaaaaaactgcagctagTTTCAGTGAGACTTTGGTGCAATGTTTGGATAGCTCTTTTACAGCCTTAACTGTAGACCTTTGAGCCTTCCTGACATGAATGAAGAAGTCACAGAGCCAATGAAAAGCTTTGTTTCTCCACACAGGCTAAAACAAAGTTAAACATAAGCTTCAtgggtTAGCACCCTTTCCATGGTGTCctccaccttgtgccctgagtcccctgggataggttccaggctccccgcgaccctgtgtaggataagtggtacagaaaatggatggatggattaaacATCTTTTGCCCAGTGTATTAtactctgtgattttttttgtactatataaaatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210004 lncRNA downstream 17324 7137629 ~ 7138904 (-) True G177404
TU209973 lncRNA downstream 96678 7058532 ~ 7059550 (-) True G177374
TU209925 lncRNA downstream 296739 6858539 ~ 6859489 (-) False LOC113536608
TU209633 lncRNA downstream 417620 6738321 ~ 6738608 (-) True G177097
XR_004579067.1 lncRNA downstream 566932 6579004 ~ 6589296 (-) False LOC117598400
TU210062 lncRNA upstream 109940 7267561 ~ 7271271 (-) True G177448
TU210074 lncRNA upstream 132264 7289885 ~ 7290092 (-) True G177455
TU210078 lncRNA upstream 135296 7292917 ~ 7293170 (-) True G177459
TU210088 lncRNA upstream 217406 7375027 ~ 7375235 (-) True G177469
TU210110 lncRNA upstream 256346 7413967 ~ 7414185 (-) True G177491
XM_026930690.2 mRNA downstream 1519 7150679 ~ 7154709 (-) True tk1
XM_026930612.2 mRNA downstream 48019 7079500 ~ 7108209 (-) False tmc6b
XM_026930610.2 mRNA downstream 48051 7079500 ~ 7108177 (-) False tmc6b
XM_026930611.2 mRNA downstream 48051 7079500 ~ 7108177 (-) True tmc6b
XM_034308712.1 mRNA downstream 100304 7018805 ~ 7055924 (-) True aspscr1
XM_026930727.2 mRNA upstream 22587 7180208 ~ 7190834 (-) False ogal
XM_034308948.1 mRNA upstream 22587 7180208 ~ 7190826 (-) False ogal
XM_026930726.2 mRNA upstream 22587 7180208 ~ 7190813 (-) True ogal
XM_026930817.2 mRNA upstream 34634 7192255 ~ 7202864 (-) False si:dkey-93h22.8
XM_026930816.2 mRNA upstream 34634 7192255 ~ 7202864 (-) True si:dkey-93h22.8
TU209010 other downstream 1447963 5696458 ~ 5708265 (-) True LOC113536561
TU209012 other downstream 1447963 5696458 ~ 5708265 (-) False LOC113536561
trnai-uau_2 other downstream 1841974 5314162 ~ 5314254 (-) True trnai-uau_2
trnai-uau_1 other downstream 1865634 5290502 ~ 5290594 (-) True trnai-uau_1
TU208736 other downstream 1959410 5191964 ~ 5196818 (-) False trip4
TU210154 other upstream 323828 7481449 ~ 7483958 (-) False si:dkey-56d12.4
XR_004579066.1 other upstream 422813 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579065.1 other upstream 422813 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579064.1 other upstream 422813 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579063.1 other upstream 422813 7580434 ~ 7588815 (-) True si:ch1073-365p7.2

Expression Profile