RNA id: XR_004579116.1


Basic Information

Item Value
RNA id XR_004579116.1
length 2543
lncRNA type inter_gene
GC content 0.41
exon number 7
gene id LOC113536702
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 8514131 ~ 8522122 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTAAAACTGTCCTCTTGAGAACCTATAAAGGACACAAACTGCACTGTAAAATGTGAAGAATGAATTGGTTAAATCTCCTCCCATATGATCTTTGGAAGCTGCCTGCCTCGAGTACAGTGccttgtgtgtgcaggtgtataCTCTGTTCCTGTTCGGACTGACGCCTGTGCTGCGTattccagAGGGATTACAGCAACGACATACACTGTAGACTGTGATTTCTCATGCAGTGCTAGCAGACTGCACTGGATCATCTTGCAGAAATGCTGTGGGTGTGGATGACACTGTGCCTCATGTGGCAAGGAACAAGCAGCTTCATGATCCACAACAAAGTGGAAAGCCTGTGCCTTGAGGACTCCTTCGGAGATGCTGGAGTTCAGTTAAAGAGATGCAGTGTGGACTTGGAGCTCCAGCAATGGATCTGGATAGAGCAGACGTTCCTCAtgaatgtacacacacaacgGTGCCTGTCTGCCTTCCACAGTGACCCAGTCCAGACTCTCGACTGTGATGGTGAAGATGAACTGCAGTGGCAGTGTATGAACAACAGGCTCATCAGCATGAGTAACAACCTGGAGCTAGGTGTGCACAGGGGAAGCCTGGCTCTGACCACCACAGGGGAAAAGCACCAGGTGGAGGTCTCTAGATCAAGGAGACATCTGTCAGGAGGAGAAGCTGAGATCCAGAAGACAGAGTGAAACAGATGAGTTTCCAGCCACTGAGAACATCATgacagaggaacagagagagtaTCTCAGGTGGTACTACCGCACTGAAGATGCGACGCCCTGGAAATTTGCCATGTTGGGCTTGTCTCTTGTGGCTCTGCTTTTGGGGTGTGTTTTCTGCGTCATTGGACTGATGGGTAACAAACATCGGCGAGAAATAGCCAAGTACAAGGCCACCACTGCTGCATCTCCTGCCACAGTGAAAGTGGAAATGGAGGAGCTTCAAGTCATCACTGAGGTCAAGGGGGACAAAGACTACTACACTGGCCAAACACAAGATGGACAACTAGAGAGCAAAGAACCACTGGAGGGAGCTAGTGAGACCGAGGCGCTGAAGCCTGGTGACATTATGGTCATTTGGAAGGACGGAAATGTCTCCAAACTCTACTCTGATTCTCAAGAGGGGGGCGAGGAGGATATTTGATGTGGAACTGAGAGACAAAGCAAATCTCAAAACAAATTCCCATTTTTTTACCTTGAATTGttagaaaaattaaaacataaaagtttaaaaggCTGGTTAAGAGAACTGCACAGTTTAGGactttctctgctctaacaTAATAAACCAATCCCAAACCCCCAATTGCATTTGGTTAATGTTGCTTTGTAGATTAAGCCTTTAAAAACATGGATGGAGTTGTTGAGTTAAGCCAAAGACAGACAATGAGACCAAGACAGAGAGTCCCTATTGTTCTctactcaaatctgattgggcagaaggtgttgtttaattttttataaaagcagttTTCTTAGGTtcgtattaatgcactcattttaatacgttatcgtttctatagttttccagcttattcacaggaacttgtatggtggacgcttcacacaatctaagactaataataaacagattaaaatgcattttcttatttaacaaagaaaaaaacatacaatagtTCTCTCAAACCTCTCTATAATGagacattcatggaaggagtctccagtgtcagcactttgaagCAGTCATTAATTTTTCCACCATggcaaagtcttttttttttttttggattttttttccatctaccttgttaacatgacaagctgtgtttgttgtttgtttgcttgttttttttacttgtgtCATGGAGTTCACCTCAGTGTTCACCAGTTACTTGTGTCATGGACATTATACAtcactataaatggataaaaagtatgtgttgttcatttataaattaaaaattgtaataattggcaaatttctgtggtataagaggaataaagcaatTTGTCATGTGCTGTTAGAACAGACATATGTTAGGTGTCTTTAATTATAGTGTCTGTGTCCAGTTGATCTACATATAGACATATCTCCaaaggtcatttttttaaaacttggttTTGAGAATGTGGGATTATGCTGAAGGTATTTAGGGTTATTTTTTACAAGTCCCCTGATCCACCATTTGACCAGCTCCAAATTCAAAATATGTAAAGGCAAAATGCTGACATGGCTGCTAAAGTGCTAAAAACCTGATTAAGATAATGGTGGATAAAGACAAAGAACAGGGCTTGGGATGAGTCGGTTAAACAAGTTAAATCTGGTGAAATGCACCAGGGAAAGCACTGGACTATGCTGTGCAGGAATATTCCAGCACTGAGACTGACATTAACAATAACGTAATGCAAATATGTCCAAAAATTATACTAACCATTAATGATAGATAGTGTGAATTATTTGTTATGATGtgaaaaaacagatgaaattagatttaattttggGACACATCTTCCTGCCATCTTGTAAATACATGTGAGTACCAAAATaccaacattaaaaatgttgcttatcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210770 lncRNA upstream 73141 8408009 ~ 8441217 (+) True G178067
TU210809 lncRNA upstream 91758 8420187 ~ 8422600 (+) True G178104
TU210742 lncRNA upstream 201706 8310660 ~ 8312652 (+) True G178046
TU210743 lncRNA upstream 204840 8307307 ~ 8309518 (+) True G178047
TU210735 lncRNA upstream 223643 8289523 ~ 8290715 (+) True G178039
TU210887 lncRNA downstream 22147 8544269 ~ 8544475 (+) True G178170
TU210915 lncRNA downstream 66698 8588820 ~ 8589555 (+) True G178192
TU210999 lncRNA downstream 285483 8807605 ~ 8808944 (+) True G178260
TU211134 lncRNA downstream 460843 8982965 ~ 8984242 (+) True G178383
TU211135 lncRNA downstream 461429 8983551 ~ 8984242 (+) False G178383
XM_026930280.2 mRNA upstream 27028 8480856 ~ 8487330 (+) True rlbp1a
XM_026930281.2 mRNA upstream 36919 8472471 ~ 8477439 (+) True slc39a1
XM_026930723.2 mRNA upstream 272233 8219886 ~ 8242125 (+) True kif7
XM_026930787.2 mRNA downstream 10113 8532235 ~ 8534139 (+) True kbtbd13
XM_026930615.2 mRNA downstream 43158 8565280 ~ 8571168 (+) True spg21
XM_026930802.2 mRNA downstream 109701 8631823 ~ 8701565 (+) True pcsk6
XM_026930769.2 mRNA downstream 189033 8711155 ~ 8717829 (+) True snrpa1
XM_026930884.2 mRNA downstream 196405 8718527 ~ 8724082 (+) True selenos
TU210703 other upstream 243609 8253421 ~ 8270749 (+) True LOC113536578
TU210704 other upstream 243609 8255867 ~ 8270749 (+) False LOC113536578
trnar-ucg_8 other upstream 266270 8248016 ~ 8248088 (+) True trnar-ucg_8
trnar-acg_6 other upstream 269334 8244952 ~ 8245024 (+) True trnar-acg_6
trnar-ucg_6 other upstream 270864 8243422 ~ 8243494 (+) False trnar-ucg_6
TU212529 other downstream 2574031 11096153 ~ 11098811 (+) True G179632
TU212546 other downstream 2638224 11160346 ~ 11161125 (+) False G179643
TU212545 other downstream 2638264 11160386 ~ 11161597 (+) True G179643
TU212547 other downstream 2638264 11160386 ~ 11161217 (+) False G179643
XR_003403700.1 other downstream 2889938 11412060 ~ 11412127 (+) True LOC113536790

Expression Profile