RNA id: XR_004579120.1


Basic Information

Item Value
RNA id XR_004579120.1
length 277
lncRNA type inter_gene
GC content 0.47
exon number 5
gene id LOC117598444
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 26560791 ~ 26561738 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTGCTCTGCTTTGCTCCACTCTCCTAATTAGCTCCGTTTTCCCTGCAGGCTGAAGTATTTAATGGCGTCACCACCCGAACCGGATAGCACCACTGATCATTTCAATTctGTAACTTCAGACAGTGAAACAGGAACTGTTGCCTTTACAGAAGAGCCAGAGGAACCATTGCTTgtGTCTGTAGACCGTGCTACACACACTGTTGTATTTAAACAAGAGCCAGAGGAACCATTGTCTGTTGATACAGACTCATCAGGCTCAGAGTTTGAGGGGCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222987 lncRNA upstream 49384 26508039 ~ 26511407 (+) False LOC117598392
TU222980 lncRNA upstream 110372 26445979 ~ 26450419 (+) True LOC117598392
XR_004579053.1 lncRNA upstream 113369 26446094 ~ 26447422 (+) False LOC117598392
XR_004579055.1 lncRNA upstream 124072 26429135 ~ 26436719 (+) True LOC117598394
XR_004579056.1 lncRNA upstream 124072 26429135 ~ 26436719 (+) False LOC117598394
TU223011 lncRNA downstream 6678 26568416 ~ 26571083 (+) False G188396
XM_026910145.2 mRNA upstream 43492 26514550 ~ 26517299 (+) True rplp2l
XM_034308580.1 mRNA upstream 69018 26491117 ~ 26491773 (+) True LOC117598404
XM_034308579.1 mRNA upstream 131690 26421913 ~ 26429101 (+) True LOC113524564
XM_026910876.2 mRNA upstream 208756 26260532 ~ 26352035 (+) False syt7b
XM_034308820.1 mRNA downstream 2563 26564301 ~ 26566306 (+) True LOC117598415
TU222884 other upstream 242216 26260677 ~ 26318575 (+) False syt7b
TU222713 other upstream 348682 26185862 ~ 26212109 (+) False polr2l
TU222712 other upstream 348682 26210559 ~ 26212109 (+) False polr2l
TU222716 other upstream 350781 26206942 ~ 26210010 (+) True G188164
TU222375 other upstream 967288 25531745 ~ 25593503 (+) False LOC113523924

Expression Profile