Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579122.1 |
| length | 249 |
| lncRNA type | inter_gene |
| GC content | 0.47 |
| exon number | 4 |
| gene id | LOC117598446 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047605.1 |
| NCBI id | CM018551.1 |
| chromosome length | 26640196 |
| location | 4578357 ~ 4583831 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0005509 | calcium ion binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU208205 | lncRNA | upstream | 3436 | 4574451 ~ 4574921 (+) | True | G175939 |
| TU208168 | lncRNA | upstream | 68656 | 4509416 ~ 4509701 (+) | True | G175905 |
| TU208155 | lncRNA | upstream | 192363 | 4385785 ~ 4385994 (+) | True | G175894 |
| TU208102 | lncRNA | upstream | 209547 | 4368607 ~ 4368810 (+) | True | G175843 |
| TU208084 | lncRNA | upstream | 277794 | 4300105 ~ 4300563 (+) | True | G175827 |
| TU208223 | lncRNA | downstream | 60754 | 4644585 ~ 4645018 (+) | False | ano1a |
| TU208224 | lncRNA | downstream | 60754 | 4644585 ~ 4645198 (+) | False | ano1a |
| TU208270 | lncRNA | downstream | 71136 | 4654967 ~ 4665352 (+) | True | G175982 |
| TU208281 | lncRNA | downstream | 111088 | 4694919 ~ 4729047 (+) | True | G175988 |
| TU208284 | lncRNA | downstream | 153420 | 4737251 ~ 4739666 (+) | True | G175991 |
| XM_026930325.2 | mRNA | upstream | 86982 | 4486552 ~ 4491375 (+) | True | ccnd1 |
| XM_034308571.1 | mRNA | upstream | 255668 | 4302271 ~ 4322689 (+) | True | tpcn2 |
| XM_034308570.1 | mRNA | upstream | 255668 | 4302272 ~ 4322689 (+) | False | tpcn2 |
| XM_026930415.2 | mRNA | upstream | 255668 | 4302273 ~ 4322689 (+) | False | tpcn2 |
| XM_034308572.1 | mRNA | upstream | 278990 | 4281246 ~ 4299367 (+) | True | nadsyn1 |
| XM_026930514.2 | mRNA | downstream | 29575 | 4613406 ~ 4645023 (+) | True | ano1a |
| XM_026930359.2 | mRNA | downstream | 63566 | 4647397 ~ 4651092 (+) | True | fadd |
| XM_026930608.2 | mRNA | downstream | 108702 | 4692533 ~ 4725750 (+) | True | csnk1g1 |
| XM_026930609.2 | mRNA | downstream | 108702 | 4692533 ~ 4725750 (+) | False | csnk1g1 |
| XM_026930739.2 | mRNA | downstream | 146668 | 4730499 ~ 4736404 (+) | True | rps17 |
| XR_004579071.1 | other | upstream | 281110 | 4281244 ~ 4297247 (+) | False | nadsyn1 |
| TU207714 | other | upstream | 920081 | 3647370 ~ 3658276 (+) | False | btbd10b |
| TU206600 | other | upstream | 2499730 | 2078077 ~ 2078627 (+) | True | G174546 |
| TU206587 | other | upstream | 2518074 | 2058970 ~ 2060283 (+) | True | G174536 |
| TU205870 | other | upstream | 3213426 | 1361782 ~ 1364931 (+) | True | G173898 |
| TU208265 | other | downstream | 72774 | 4656605 ~ 4661136 (+) | True | G175977 |
| XR_003403680.2 | other | downstream | 2538554 | 7122385 ~ 7131506 (+) | False | LOC113536390 |
| TU209855 | other | downstream | 2684053 | 7267884 ~ 7271320 (+) | False | rpl37a |
| trnae-cuc_24 | other | downstream | 3018395 | 7602226 ~ 7602297 (+) | True | trnae-cuc_24 |
| trnar-ucg_6 | other | downstream | 3659591 | 8243422 ~ 8243494 (+) | False | trnar-ucg_6 |
