Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579124.1 |
| length | 910 |
| lncRNA type | inter_gene |
| GC content | 0.45 |
| exon number | 3 |
| gene id | LOC113534769 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047605.1 |
| NCBI id | CM018551.1 |
| chromosome length | 26640196 |
| location | 15391070 ~ 15402125 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0048738 | cardiac muscle tissue development | biological_process |
| GO:0072359 | circulatory system development | biological_process |
| GO:0007507 | heart development | biological_process |
| GO:0008015 | blood circulation | biological_process |
| GO:0003013 | circulatory system process | biological_process |
| GO:0060537 | muscle tissue development | biological_process |
| GO:0014706 | striated muscle tissue development | biological_process |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU215366 | lncRNA | upstream | 7893 | 15373220 ~ 15383177 (+) | True | G181945 |
| TU215367 | lncRNA | upstream | 13843 | 15376076 ~ 15377227 (+) | True | G181946 |
| TU215365 | lncRNA | upstream | 18100 | 15372758 ~ 15372970 (+) | True | G181944 |
| TU215210 | lncRNA | upstream | 82124 | 15299248 ~ 15308946 (+) | False | G181824 |
| TU215211 | lncRNA | upstream | 82124 | 15304336 ~ 15308946 (+) | True | G181824 |
| TU215447 | lncRNA | downstream | 113616 | 15515741 ~ 15515955 (+) | True | G182012 |
| TU215564 | lncRNA | downstream | 266703 | 15668828 ~ 15673426 (+) | False | borcs8 |
| TU215565 | lncRNA | downstream | 266703 | 15668828 ~ 15673982 (+) | True | borcs8 |
| XR_004579097.1 | lncRNA | downstream | 311308 | 15713433 ~ 15755867 (+) | False | LOC113533795 |
| XR_004579102.1 | lncRNA | downstream | 312127 | 15714252 ~ 15755867 (+) | False | LOC113533795 |
| XM_034308430.1 | mRNA | upstream | 105272 | 15170861 ~ 15285798 (+) | True | rabgap1l |
| XM_026934668.2 | mRNA | downstream | 119133 | 15521258 ~ 15528248 (+) | True | hapln4 |
| XM_026912651.2 | mRNA | downstream | 260360 | 15662485 ~ 15665726 (+) | True | nr2c2ap |
| XM_026912664.2 | mRNA | downstream | 266673 | 15668798 ~ 15673445 (+) | False | borcs8 |
| XM_026912680.2 | mRNA | downstream | 266673 | 15668798 ~ 15673445 (+) | False | borcs8 |
| XM_026912688.2 | mRNA | downstream | 266673 | 15668798 ~ 15670207 (+) | False | borcs8 |
| XR_004579090.1 | other | upstream | 679343 | 14708927 ~ 14711727 (+) | False | pdzk1ip1 |
| XR_004579085.1 | other | upstream | 744248 | 14622543 ~ 14646822 (+) | True | si:dkey-121a11.3 |
| TU214729 | other | upstream | 796455 | 14589919 ~ 14594615 (+) | False | ankrd29 |
| TU214656 | other | upstream | 828104 | 14561690 ~ 14562966 (+) | False | LOC113540185 |
| TU214440 | other | upstream | 1216852 | 14165026 ~ 14174218 (+) | True | G181175 |
| TU215983 | other | downstream | 852938 | 16255063 ~ 16255852 (+) | False | LOC113532318 |
| XR_003403746.1 | other | downstream | 1178111 | 16580236 ~ 16580303 (+) | True | LOC113537281 |
| TU216336 | other | downstream | 1181178 | 16583303 ~ 16584943 (+) | True | G182819 |
| TU216450 | other | downstream | 1511133 | 16913258 ~ 16922922 (+) | True | G182877 |
| trnak-cuu_26 | other | downstream | 1627747 | 17029872 ~ 17029944 (+) | True | trnak-cuu_26 |
