RNA id: trnae-cuc_24


Basic Information

Item Value
RNA id trnae-cuc_24
length 72
RNA type tRNA
GC content 0.63
exon number 1
gene id trnae-cuc_24
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7602226 ~ 7602297 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tccctggaggactagtggttaggccacagcgctctcaccactgcggcccaggttcgattcctggccagggta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210222 lncRNA upstream 54395 7547366 ~ 7547831 (+) True G177594
TU210207 lncRNA upstream 85335 7514816 ~ 7516891 (+) True G177580
TU210139 lncRNA upstream 143469 7458538 ~ 7458757 (+) True G177520
TU210137 lncRNA upstream 145621 7455553 ~ 7456605 (+) True G177518
TU210136 lncRNA upstream 146756 7455242 ~ 7455470 (+) True G177517
TU210274 lncRNA downstream 71219 7673516 ~ 7674470 (+) True G177630
TU210272 lncRNA downstream 73568 7675865 ~ 7676699 (+) True G177628
TU210419 lncRNA downstream 213766 7816063 ~ 7816610 (+) True G177751
TU210641 lncRNA downstream 525285 8127582 ~ 8127971 (+) True G177955
TU210693 lncRNA downstream 611681 8213978 ~ 8214220 (+) True G178001
XM_026930639.2 mRNA upstream 40731 7552973 ~ 7561495 (+) True gpr137bb
XM_026930574.2 mRNA upstream 88437 7501078 ~ 7513789 (+) True tbce
XM_026930576.2 mRNA upstream 109983 7484243 ~ 7492243 (+) True tomm20b
XM_026930387.2 mRNA upstream 240296 7356919 ~ 7361930 (+) True map1lc3c
XM_026930801.2 mRNA upstream 312709 7282097 ~ 7289517 (+) True opn6a
XM_026930291.2 mRNA downstream 179364 7781661 ~ 7794628 (+) True si:ch211-106j24.1
XM_026930745.2 mRNA downstream 242376 7844673 ~ 7925739 (+) True LOC113536658
XM_026930744.2 mRNA downstream 246189 7848486 ~ 7925739 (+) False LOC113536658
XM_026930748.2 mRNA downstream 246189 7848486 ~ 7925739 (+) False LOC113536658
XM_026930749.2 mRNA downstream 246189 7848486 ~ 7925739 (+) False LOC113536658
TU209855 other upstream 330906 7267884 ~ 7271320 (+) False rpl37a
XR_003403680.2 other upstream 470720 7122385 ~ 7131506 (+) False LOC113536390
TU208265 other upstream 2941090 4656605 ~ 4661136 (+) True G175977
XR_004579071.1 other upstream 3304979 4281244 ~ 4297247 (+) False nadsyn1
TU207714 other upstream 3943950 3647370 ~ 3658276 (+) False btbd10b
trnar-ucg_6 other downstream 641125 8243422 ~ 8243494 (+) False trnar-ucg_6
trnar-acg_6 other downstream 642655 8244952 ~ 8245024 (+) True trnar-acg_6
trnar-ucg_8 other downstream 645719 8248016 ~ 8248088 (+) True trnar-ucg_8
TU210703 other downstream 651124 8253421 ~ 8270749 (+) True LOC113536578
TU210704 other downstream 653570 8255867 ~ 8270749 (+) False LOC113536578