RNA id: trnae-uuc_3


Basic Information

Item Value
RNA id trnae-uuc_3
length 72
RNA type tRNA
GC content 0.64
exon number 1
gene id trnae-uuc_3
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 8890627 ~ 8890698 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tccctggaggactagtggttaggccacagcgctttCACCGCTgaggcccgggttcgattcccggccagggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211159 lncRNA downstream 178509 8711177 ~ 8712118 (-) True G178398
TU210961 lncRNA downstream 297222 8593186 ~ 8593405 (-) True G178227
TU210939 lncRNA downstream 368542 8521801 ~ 8522085 (-) True G178208
TU210754 lncRNA downstream 566463 8323619 ~ 8324164 (-) True G178057
XR_003403692.2 lncRNA downstream 615267 8271107 ~ 8275360 (-) True LOC113536653
TU211259 lncRNA upstream 92520 8983218 ~ 8984148 (-) False asb7
TU211271 lncRNA upstream 112946 9003644 ~ 9003852 (-) True G178501
TU211458 lncRNA upstream 296373 9187071 ~ 9189914 (-) True G178673
TU211464 lncRNA upstream 306902 9197600 ~ 9197805 (-) True G178679
TU211667 lncRNA upstream 419526 9310224 ~ 9311903 (-) True G178867
XM_026930526.2 mRNA downstream 278321 8596180 ~ 8612306 (-) True plekho2
XM_026930613.2 mRNA downstream 301275 8572475 ~ 8589352 (-) False ankdd1a
XM_026930614.2 mRNA downstream 301275 8572475 ~ 8589352 (-) True ankdd1a
XM_026930548.2 mRNA downstream 325719 8550368 ~ 8564908 (-) False clpxa
XM_026930546.2 mRNA downstream 325720 8550368 ~ 8564907 (-) True clpxa
XM_026930283.2 mRNA upstream 36114 8926812 ~ 8950809 (-) True aldh1a3
XM_026930818.2 mRNA upstream 92484 8983182 ~ 8995113 (-) False asb7
XM_026930819.2 mRNA upstream 92484 8983182 ~ 8994947 (-) True asb7
XM_026930820.2 mRNA upstream 98464 8989162 ~ 8995120 (-) False asb7
XM_026930805.2 mRNA upstream 430268 9320966 ~ 9336186 (-) True mthfs
trnar-acg_8 other downstream 642865 8247690 ~ 8247762 (-) True trnar-acg_8
trnar-acg_7 other downstream 643852 8246703 ~ 8246775 (-) True trnar-acg_7
trnar-ucg_7 other downstream 645906 8244649 ~ 8244721 (-) True trnar-ucg_7
trnar-acg_5 other downstream 647824 8242731 ~ 8242803 (-) True trnar-acg_5
trnar-acg_4 other downstream 648449 8242106 ~ 8242178 (-) True trnar-acg_4
TU211757 other upstream 631718 9522416 ~ 9523330 (-) True G178942
TU211855 other upstream 923194 9813892 ~ 9815225 (-) True G179035
TU212647 other upstream 2353277 11243975 ~ 11246305 (-) False nppc
TU212749 other upstream 2518394 11409092 ~ 11415440 (-) False G179803
TU212758 other upstream 2605376 11496074 ~ 11503962 (-) False LOC117598430