RNA id: trnag-gcc_14


Basic Information

Item Value
RNA id trnag-gcc_14
length 71
RNA type tRNA
GC content 0.62
exon number 1
gene id trnag-gcc_14
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 13267707 ~ 13267777 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGCCACGCGGgaggcccgggttcgattcccggccaatGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213946 lncRNA upstream 28124 13236477 ~ 13239583 (+) False aqp12
TU213871 lncRNA upstream 64559 13136137 ~ 13203148 (+) True G180695
TU213678 lncRNA upstream 416528 12850960 ~ 12851179 (+) True G180534
TU213659 lncRNA upstream 426425 12836868 ~ 12841282 (+) True G180516
TU213315 lncRNA upstream 585144 12654422 ~ 12682563 (+) True G180268
TU214029 lncRNA downstream 31503 13299280 ~ 13302297 (+) True G180833
TU214035 lncRNA downstream 134110 13401887 ~ 13406255 (+) True G180838
TU214147 lncRNA downstream 180168 13447945 ~ 13448184 (+) True G180926
TU214166 lncRNA downstream 361918 13629695 ~ 13640963 (+) True G180945
TU214388 lncRNA downstream 829883 14097660 ~ 14100987 (+) True G181136
XM_026930329.2 mRNA upstream 28070 13236998 ~ 13239637 (+) True aqp12
XM_034308898.1 mRNA upstream 156001 13096712 ~ 13111706 (+) True ankmy1
XM_026930730.2 mRNA upstream 172744 13088273 ~ 13094963 (+) True hsh2d
XM_034308887.1 mRNA downstream 10181 13277958 ~ 13280512 (+) True LOC117598427
XM_026927676.2 mRNA downstream 40664 13308441 ~ 13313447 (+) False cep19
XM_026927683.2 mRNA downstream 40894 13308671 ~ 13313447 (+) True cep19
XM_034308910.1 mRNA downstream 41071 13308848 ~ 13313447 (+) False cep19
XM_034308819.1 mRNA downstream 52166 13319943 ~ 13368258 (+) True impact
trnag-gcc_13 other upstream 1872 13265764 ~ 13265835 (+) True trnag-gcc_13
trnag-gcc_12 other upstream 3813 13263824 ~ 13263894 (+) True trnag-gcc_12
trnag-gcc_11 other upstream 9631 13258008 ~ 13258076 (+) True trnag-gcc_11
trnag-gcc_10 other upstream 11583 13256057 ~ 13256124 (+) True trnag-gcc_10
trnag-gcc_9 other upstream 17266 13250370 ~ 13250441 (+) True trnag-gcc_9
trnag-gcc_15 other downstream 1879 13269656 ~ 13269729 (+) True trnag-gcc_15
trnag-gcc_16 other downstream 5771 13273548 ~ 13273617 (+) True trnag-gcc_16
trnag-gcc_17 other downstream 7709 13275486 ~ 13275556 (+) True trnag-gcc_17
TU214031 other downstream 33478 13301255 ~ 13305716 (+) True G180834
TU214157 other downstream 227813 13495590 ~ 13495985 (+) True G180936