RNA id: trnag-gcc_15


Basic Information

Item Value
RNA id trnag-gcc_15
length 74
RNA type tRNA
GC content 0.62
exon number 1
gene id trnag-gcc_15
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 13269656 ~ 13269729 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCATTGGTGGTTCAGTGGTAGAATTTCTCGCCTGCCACGCGCGGgaggcccgggttcgattcccggccaatGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213946 lncRNA upstream 30073 13236477 ~ 13239583 (+) False aqp12
TU213871 lncRNA upstream 66508 13136137 ~ 13203148 (+) True G180695
TU213678 lncRNA upstream 418477 12850960 ~ 12851179 (+) True G180534
TU213659 lncRNA upstream 428374 12836868 ~ 12841282 (+) True G180516
TU213315 lncRNA upstream 587093 12654422 ~ 12682563 (+) True G180268
TU214029 lncRNA downstream 29551 13299280 ~ 13302297 (+) True G180833
TU214035 lncRNA downstream 132158 13401887 ~ 13406255 (+) True G180838
TU214147 lncRNA downstream 178216 13447945 ~ 13448184 (+) True G180926
TU214166 lncRNA downstream 359966 13629695 ~ 13640963 (+) True G180945
TU214388 lncRNA downstream 827931 14097660 ~ 14100987 (+) True G181136
XM_026930329.2 mRNA upstream 30019 13236998 ~ 13239637 (+) True aqp12
XM_034308898.1 mRNA upstream 157950 13096712 ~ 13111706 (+) True ankmy1
XM_026930730.2 mRNA upstream 174693 13088273 ~ 13094963 (+) True hsh2d
XM_034308887.1 mRNA downstream 8229 13277958 ~ 13280512 (+) True LOC117598427
XM_026927676.2 mRNA downstream 38712 13308441 ~ 13313447 (+) False cep19
XM_026927683.2 mRNA downstream 38942 13308671 ~ 13313447 (+) True cep19
XM_034308910.1 mRNA downstream 39119 13308848 ~ 13313447 (+) False cep19
XM_034308819.1 mRNA downstream 50214 13319943 ~ 13368258 (+) True impact
trnag-gcc_14 other upstream 1879 13267707 ~ 13267777 (+) True trnag-gcc_14
trnag-gcc_13 other upstream 3821 13265764 ~ 13265835 (+) True trnag-gcc_13
trnag-gcc_12 other upstream 5762 13263824 ~ 13263894 (+) True trnag-gcc_12
trnag-gcc_11 other upstream 11580 13258008 ~ 13258076 (+) True trnag-gcc_11
trnag-gcc_10 other upstream 13532 13256057 ~ 13256124 (+) True trnag-gcc_10
trnag-gcc_16 other downstream 3819 13273548 ~ 13273617 (+) True trnag-gcc_16
trnag-gcc_17 other downstream 5757 13275486 ~ 13275556 (+) True trnag-gcc_17
TU214031 other downstream 31526 13301255 ~ 13305716 (+) True G180834
TU214157 other downstream 225861 13495590 ~ 13495985 (+) True G180936
TU214440 other downstream 895297 14165026 ~ 14174218 (+) True G181175